Browse Element(s) Details


Os.31468.2.S1_at

Description gb:NM_185414.1
DB_XREF= gi:34897913
TID=Os.31468.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.31468 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0232010/11hypothetical protein
LOC_Os06g022703/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g02280NANA6+753704..754111hypothetical protein
LOC_Os06g02290OsAffx.22603.1.S1_at11/116+755270..755926hypothetical protein
LOC_Os06g02304OsAffx.16205.1.S1_at2/116+757634..764184retrotransposon protein, putative, unclassified
LOC_Os06g02320Os.31468.2.S1_at10/116+775290..775691hypothetical protein
LOC_Os06g02330Os.31468.1.S1_at10/116+776223..778771expressed protein
LOC_Os06g02340Os.23621.1.S1_a_at11/116+778996..781324F-box domain containing protein, expressed
LOC_Os06g02350OsAffx.15232.1.S1_x_at11/116+781722..782180Skp1 family, dimerisation domain containing protein
LOC_Os06g02350Os.44828.1.A1_at1/116+781722..782180Skp1 family, dimerisation domain containing protein
LOC_Os06g02360Os.44828.1.A1_at11/116+785864..786614Skp1 family, dimerisation domain containing protein, expressed
LOC_Os06g02370Os.4506.3.S1_x_at11/116+795317..799813expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31468.2.S1_at--682--10612Chr06:775697..776153 (25 bp)
TTCTGGCTCGCTGGACAGTTGTCGT
NONE
Os.31468.2.S1_at--896--372Chr06:775652..775676 (25 bp)
ATCAACAAGATGATGAGCTCCGACG
LOC_Os06g02320
Os.31468.2.S1_at--1102--1251Chr06:775624..775648 (25 bp)
AGATATCATCAATGGCGGAGAGGGC
LOC_Os06g02320
Os.31468.2.S1_at--241--3931Chr06:775600..775624 (25 bp)
CGGCGAGCCTGTTGCGGCAACTGAT
LOC_Os06g02320
Os.31468.2.S1_at--557--10692Chr06:775589..775613 (25 bp)
TTGCGGCAACTGATCGAGGACGGCT
LOC_Os06g02320
Os.31468.2.S1_at--438--2351Chr06:775553..775577 (25 bp)
AAACCCCTCGCTGAGATGGTCGAGT
LOC_Os06g02320
Os.31468.2.S1_at--708--6151Chr06:775487..775511 (25 bp)
GAGGAAGTATTAGACGGCGAGTCCA
LOC_Os06g02320
Os.31468.2.S1_at--639--1931Chr06:775448..775472 (25 bp)
ACGGACATACTCAGGCTGGAGGCCA
LOC_Os06g02320
Os.31468.2.S1_at--337--8552Chr06:775411..775435 (25 bp)
TGGAGAACATGCTCAGCGCACGGCG
LOC_Os06g02320
Os.31468.2.S1_at--979--3631Chr06:775333..775357 (25 bp)
CTTCCACGGCTTTCACAGTATACAT
LOC_Os06g02320
Os.31468.2.S1_at--1136--8291Chr06:775326..775350 (25 bp)
GGCTTTCACAGTATACATTCATTTA
LOC_Os06g02320
Target Sequence 
TTCTGGCTCGCTGGACAGTTGTCGTCATCAATGGCGGAAGAAGATATCAACAAGATGATGAGCTCCGACGGGGAGATATC
ATCAATGGCGGAGAGGGCGGCGAGCCTGTTGCGGCAACTGATCGAGGACGGCTGCGCCGCCGCCAAACCCCTCGCTGAGA
TGGTCGAGTACTGCGCCAAGCACGCCGCCGGCGAAGCTCAAGGTAAGGAAGAGGAAGTATTAGACGGCGAGTCCAGCGAC
GAGGAGGAGACGGACATACTCAGGCTGGAGGCCAGCTTGATGGGCGTGGAGAACATGCTCAGCGCACGGCGGAGCTCATC
AAGGACTAGGACAAGCCGCCGGAGCCGTCGCCGGAGAACGTCCCCTTCCACGGCTTTCACAGTATACATTCATTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31468.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis