Browse Element(s) Details


Os.12628.1.S1_at

Description gb:AK101334.1
DB_XREF= gi:32986543
TID=Os.12628.1
CNT=93
FEA=FLmRNA
TIER=FL+Stack
STK=26
UG=Os.12628 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ESTs C99033(E4350),C99032(E4350),D46006(S10372), D47177(S12347),C28582(C61678),C27203(C51329) correspond to a region of the predicted gene.~Similar to Arabidopsis thaliana chromosome I BAC T5A14 genomic sequence ...
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033034I03, full insert sequence.
FL= gb:AK062098.1 gb:AK101334.1 gb:AK060117.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0238011/11RuBisCO subunit binding-protein beta subunit, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g02360Os.44828.1.A1_at11/116+785864..786614Skp1 family, dimerisation domain containing protein, expressed
LOC_Os06g02370Os.4506.3.S1_x_at11/116+795317..799813expressed protein
LOC_Os06g02380Os.51795.1.S1_at11/116+810040..815535RuBisCO subunit binding-protein beta subunit, chloroplast precursor, putative, expressed
LOC_Os06g02380Os.12628.1.S1_at11/116+810040..815535RuBisCO subunit binding-protein beta subunit, chloroplast precursor, putative, expressed
LOC_Os06g02390OsAffx.4696.1.S1_at11/116+818374..819357ADP-ribosylation factor 1, putative
LOC_Os06g02400Os.44826.1.S1_at5/116+824557..828064F-box domain containing protein
LOC_Os06g02410OsAffx.30517.2.A1_at11/116+827718..829762expressed protein
LOC_Os06g02410Os.4509.1.S1_x_at10/116+827718..829762expressed protein
LOC_Os06g02420Os.4510.1.S1_at6/116+831842..833940ozone-responsive stress-related protein, putative, expressed
LOC_Os06g02430Os.15602.1.S1_x_at11/116+834630..838033expressed protein
LOC_Os06g02430Os.15602.1.S1_at10/116+834630..838033expressed protein
LOC_Os06g02440Os.4513.1.S1_at11/116+840323..843186expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0008219biological_processcell death
GO:0009627biological_processsystemic acquired resistance
GO:0051085biological_processchaperone cofactor dependent protein folding
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12628.1.S1_at--929--9771Chr06:811196..811220 (25 bp)
TAAGGAGAGCGCTGAGCTACCCGCT
LOC_Os06g02380
Os.12628.1.S1_at--421--4851Chr06:811181..811205 (25 bp)
GCTACCCGCTTAAATTGATTGCTAA
LOC_Os06g02380
Os.12628.1.S1_at--936--7891Chr06:811043..811067 (25 bp)
GGTTCTCTCTAACGATAACTTCAAG
LOC_Os06g02380
Os.12628.1.S1_at--377--391Chr06:810515..810991 (25 bp)
ATCATTGACCCCACTAAGGTGGTGA
LOC_Os06g02380
Os.12628.1.S1_at--670--8451Chr06:810463..810487 (25 bp)
TGGCCAAGACATTCCTCACATCGGA
LOC_Os06g02380
Os.12628.1.S1_at--824--9371Chr06:810427..810451 (25 bp)
TCGAGATCAAGGAGCCTGAGCCTGC
LOC_Os06g02380
Os.12628.1.S1_at--132--9291Chr06:810276..810297 (22 bp)
TCCGGCTACGGGTACTGATGACTAA
LOC_Os06g02380
Os.12628.1.S1_at--199--9871Chr06:810249..810273 (25 bp)
TACAGTTACTTGTTCTCCGGGAAGG
LOC_Os06g02380
Os.12628.1.S1_at--1091--7091Chr06:810225..810249 (25 bp)
GTCACTGGCCGTCAATTTTTGGGTA
LOC_Os06g02380
Os.12628.1.S1_at--297--5611Chr06:810157..810181 (25 bp)
GACAATTTGATTTGTTCCCATGGGA
LOC_Os06g02380
Os.12628.1.S1_at--690--7491Chr06:810099..810123 (25 bp)
GTGGTGTAACTGGAACGGCTGTCAA
LOC_Os06g02380
Target Sequence 
TAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATTGCTAAGAATGCTGGTGTTAATGGAAGCGTTGTTACCGAGAAGGTT
CTCTCTAACGATAACTTCAAGTTTGGTTACAATGCTGCAACTGGACAGTACGAGGATTTGATGGCTGCTGGTATCATTGA
CCCCACTAAGGTGGTGAGATGTTGTCTTGAGCATGCTGCGTCGGTGGCCAAGACATTCCTCACATCGGATGTCGTCGTCG
TCGAGATCAAGGAGCCTGAGCCTGCGCCCGTCACCAACCCGATGGACAACTCCGGCTACGGGTACTGATGACTAAGTTAC
AGTTACTTGTTCTCCGGGAAGGTCACTGGCCGTCAATTTTTGGGTAGTAGGCTTGAATCTGAATTTTGGTGAGATTTGAG
TAGTTTCGAGACAATTTGATTTGTTCCCATGGGAAGTGAAATAAACAGGGTCACTATAGCAAAATTTGTGGTGTAACTGG
AACGGCTGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12628.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis