Browse Element(s) Details


Os.54341.1.S1_at

Description gb:AK103521.1
DB_XREF= gi:32988730
TID=Os.54341.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54341 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033131J04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033131J04, full insert sequence.
FL= gb:AK103521.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4372011/11early-responsive to dehydration protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43670Os.47923.2.A1_at9/1112+27098644..27101104Erg28 like protein, expressed
LOC_Os12g43680NANA12+27107237..27108141transposon protein, putative, unclassified
LOC_Os12g43700Os.53937.1.S1_x_at11/1112+27112369..27114048SCP-like extracellular protein, expressed
LOC_Os12g43700Os.53937.1.S1_at11/1112+27112369..27114048SCP-like extracellular protein, expressed
LOC_Os12g43700OsAffx.30671.1.S1_x_at2/1112+27112369..27114048SCP-like extracellular protein, expressed
LOC_Os12g43710OsAffx.32179.1.S1_at10/1112+27117322..27118698hypothetical protein
LOC_Os12g43720Os.54341.1.S1_at11/1112+27120899..27126815early-responsive to dehydration protein, putative, expressed
LOC_Os12g43730OsAffx.7882.1.S1_x_at1/1112+27128865..27132954expressed protein
LOC_Os12g43740NANA12+27135120..27136028oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os12g43750Os.55110.1.S1_at11/1112+27139430..27140307expressed protein
LOC_Os12g43760Os.38172.1.S1_x_at6/1112+27151012..27153132transposon protein, putative, unclassified
LOC_Os12g43760Os.43567.1.S1_x_at2/1112+27151012..27153132transposon protein, putative, unclassified
LOC_Os12g43760Os.53217.1.S1_x_at2/1112+27151012..27153132transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54341.1.S1_at--306--4911Chr12:27121467..27121491 (25 bp)
GCTTCATTCTGCCTATTGTCAGTTC
LOC_Os12g43720
Os.54341.1.S1_at--619--2871Chr12:27121384..27121408 (25 bp)
AAGGGTGTAGCTCTGATAAGTCGAA
LOC_Os12g43720
Os.54341.1.S1_at--1151--5431Chr12:27121340..27121364 (25 bp)
GAACCCAGAGCGGAGTTGTCTCACC
LOC_Os12g43720
Os.54341.1.S1_at--958--6631Chr12:27121326..27121350 (25 bp)
GTTGTCTCACCCAACACTGAATGGA
LOC_Os12g43720
Os.54341.1.S1_at--1024--8991Chr12:27121309..27121333 (25 bp)
TGAATGGACTCCCAGTTAGCCGTCT
LOC_Os12g43720
Os.54341.1.S1_at--1032--1671Chr12:27121292..27121316 (25 bp)
AGCCGTCTTCGGCATGCTGTGAAGT
LOC_Os12g43720
Os.54341.1.S1_at--230--6551Chr12:27121266..27121290 (25 bp)
GATTACTTTCCTTGTCAGATTGCAG
LOC_Os12g43720
Os.54341.1.S1_at--771--6371Chr12:27121096..27121120 (25 bp)
GATCCGTTTGATTTCCAAGCTAGTG
LOC_Os12g43720
Os.54341.1.S1_at--245--6891Chr12:27121047..27121071 (25 bp)
GTATATTCAAGCCTTTGCCATGCAG
LOC_Os12g43720
Os.54341.1.S1_at--367--6931Chr12:27121014..27121038 (25 bp)
GTAGTGCTAGGTCATTCTGTTACAT
LOC_Os12g43720
Os.54341.1.S1_at--345--10251Chr12:27120971..27120995 (25 bp)
TTTGGTAACCTCAGCTACTCTGCAA
LOC_Os12g43720
Target Sequence 
GCTTCATTCTGCCTATTGTCAGTTCCACGACACTGAAGATATACCCTTGGAGAAAATTCAGACTGTCGGGAGCGATGAGG
AACAAGGGTGTAGCTCTGATAAGTCGAATGGAAAAGAAAGCTTCGAGGAACCCAGAGCGGAGTTGTCTCACCCAACACTG
AATGGACTCCCAGTTAGCCGTCTTCGGCATGCTGTGAAGTCGATTACTTTCCTTGTCAGATTGCAGAAAAGAGGTTTGTC
AGAATAGAATAGGACATCTAACTACTAACCCCTTCATCAGCCTGTTCAGCGATGAAAATGTACAGCCACATACATCATAC
AACATACATTGAGAGAGCATCAGGATACCTGAAAAGCAATTTTGTTGTTTTGATCCGTTTGATTTCCAAGCTAGTGACTC
TAGGACATGCTAGTTAATCAGTATATTCAAGCCTTTGCCATGCAGATATTGTTGTAGTGCTAGGTCATTCTGTTACATGA
AATTTAAACTTGTTTCTTTGGTAACCTCAGCTACTCTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54341.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis