Browse Element(s) Details


OsAffx.32179.1.S1_at

Description tigr:9640.m04307
TID=OsAffx.32179.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4371010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43660Os.53319.1.S1_at11/1112+27088887..27092651Leucine Rich Repeat family protein, expressed
LOC_Os12g43660OsAffx.2477.1.S1_x_at1/1112+27088887..27092651Leucine Rich Repeat family protein, expressed
LOC_Os12g43670Os.47923.2.A1_at9/1112+27098644..27101104Erg28 like protein, expressed
LOC_Os12g43680NANA12+27107237..27108141transposon protein, putative, unclassified
LOC_Os12g43700Os.53937.1.S1_x_at11/1112+27112369..27114048SCP-like extracellular protein, expressed
LOC_Os12g43700Os.53937.1.S1_at11/1112+27112369..27114048SCP-like extracellular protein, expressed
LOC_Os12g43700OsAffx.30671.1.S1_x_at2/1112+27112369..27114048SCP-like extracellular protein, expressed
LOC_Os12g43710OsAffx.32179.1.S1_at10/1112+27117322..27118698hypothetical protein
LOC_Os12g43720Os.54341.1.S1_at11/1112+27120899..27126815early-responsive to dehydration protein, putative, expressed
LOC_Os12g43730OsAffx.7882.1.S1_x_at1/1112+27128865..27132954expressed protein
LOC_Os12g43740NANA12+27135120..27136028oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os12g43750Os.55110.1.S1_at11/1112+27139430..27140307expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32179.1.S1_at--361--9931Chr12:27118606..27118630 (25 bp)
TACTGGTGCTAGCAACGTGCAGCTG
LOC_Os12g43710
OsAffx.32179.1.S1_at--129--3971Chr12:27118433..27118457 (25 bp)
CGGAGGCCATCCAGTTGCCGCCGGT
LOC_Os12g43710
OsAffx.32179.1.S1_at--391--7291Chr12:27118410..27118434 (25 bp)
GTGCCGTGCTGCTGGATGTACGACC
LOC_Os12g43710
OsAffx.32179.1.S1_at--286--9131Chr12:27118401..27118425 (25 bp)
TGCTGGATGTACGACCGCAGCCGCT
LOC_Os12g43710
OsAffx.32179.1.S1_at--976--8451Chr12:27117532..27117552 (21 bp)
TGGCCAGGTGGTGTGTTGTCTATAA
LOC_Os12g43710
OsAffx.32179.1.S1_at--1089--7131Chr12:27117515..27117539 (25 bp)
GTCTATAAGTATACCGCTGCGAAAT
LOC_Os12g43710
OsAffx.32179.1.S1_at--1013--4091Chr12:27117505..27117525 (21 bp)
CGCTGCGAAATTACTTAAACGTCTT
LOC_Os12g43710
OsAffx.32179.1.S1_at--664--6511Chr12:27117439..27117463 (25 bp)
GATTTTTCCAAATGAGATGATCGTA
LOC_Os12g43710
OsAffx.32179.1.S1_at--221--1331Chr12:27117409..27117433 (25 bp)
AGAGGTGTTTGGTTGCCATTCACAA
LOC_Os12g43710
OsAffx.32179.1.S1_at--270--10251Chr12:27117402..27117426 (25 bp)
TTTGGTTGCCATTCACAATCTGCCA
LOC_Os12g43710
OsAffx.32179.1.S1_at--31--3191Chr12:27117019..27117411 (25 bp)
CAATCTGCCACTTCTAAGTTTTTAA
NONE
Target Sequence 
TACTGGTGCTAGCAACGTGCAGCTGGTGGGCGGCGAGGAGGAGGACCGGCCTGGTGCCGACGGCGGCGTGGAGGGCGAGG
ATGAGGCGGTCGTCGTGGTCGGAGAAGGCGCCGTGGCGGATGCCGGGGCGGAGGTAGTTGAGCCAGCGGAGGCGGCAGCT
CTTGCCGCAGCGGCGGAGGCCATCCAGTTGCCGCCGGTGCCGTGCTGCTGGATGTACGACCGCAGCCGCTCGTCGTCCTC
CGCCGTCCATGCCCCGCGCTTCGGCTTCACCGCCGCCTTGTCGCAGCACGCCGACGACCTCCCCATCGCTCGCTCGCTCG
ATCGAAAGGGAGATGCGAGAGTGGCCAGGTGGTGTGTTGTCTATAAGTATACCGCTGCGAAATTACTTAAACGTCTTAAT
ATATTTTATTTTGTGATTTTTCCAAATGAGATGATCGTATTTATAGAGGTGTTTGGTTGCCATTCACAATCTGCCACTTC
TAAGTTTTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32179.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis