Browse Element(s) Details


Os.53319.1.S1_at

Description gb:AK071957.1
DB_XREF= gi:32981980
TID=Os.53319.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53319 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013082M02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013082M02, full insert sequence.
FL= gb:AK071957.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4366011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43630Os.4155.1.S1_at10/1112+27061048..27065748Malate dehydrogenase, glyoxysomal precursor, putative, expressed
LOC_Os12g43640Os.40045.1.S1_at6/1112+27075526..27078938Leucine Rich Repeat family protein, expressed
LOC_Os12g43649Os.15614.1.S1_at1/1112+27087329..27088085NA
LOC_Os12g43660Os.53319.1.S1_at11/1112+27088887..27092651Leucine Rich Repeat family protein, expressed
LOC_Os12g43660OsAffx.2477.1.S1_x_at1/1112+27088887..27092651Leucine Rich Repeat family protein, expressed
LOC_Os12g43670Os.47923.2.A1_at9/1112+27098644..27101104Erg28 like protein, expressed
LOC_Os12g43680NANA12+27107237..27108141transposon protein, putative, unclassified
LOC_Os12g43700Os.53937.1.S1_x_at11/1112+27112369..27114048SCP-like extracellular protein, expressed
LOC_Os12g43700Os.53937.1.S1_at11/1112+27112369..27114048SCP-like extracellular protein, expressed
LOC_Os12g43700OsAffx.30671.1.S1_x_at2/1112+27112369..27114048SCP-like extracellular protein, expressed
LOC_Os12g43710OsAffx.32179.1.S1_at10/1112+27117322..27118698hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53319.1.S1_at--381--3811Chr12:27092210..27092234 (25 bp)
CTCCGGCGAGCCAAAGCTGTAATAA
LOC_Os12g43660
Os.53319.1.S1_at--810--431Chr12:27092237..27092261 (25 bp)
ATCTTTAATCTAGCTAATGCGTGCA
LOC_Os12g43660
Os.53319.1.S1_at--1056--4831Chr12:27092249..27092273 (25 bp)
GCTAATGCGTGCAAACGTACTGTGT
LOC_Os12g43660
Os.53319.1.S1_at--1076--6991Chr12:27092265..27092289 (25 bp)
GTACTGTGTAATTATCCGGCCGGAT
LOC_Os12g43660
Os.53319.1.S1_at--303--9991Chr12:27092277..27092301 (25 bp)
TATCCGGCCGGATTAGTAGCTAGTG
LOC_Os12g43660
Os.53319.1.S1_at--799--5171Chr12:27092431..27092455 (25 bp)
GCAAGTTGCAAAGGTTGTTCGCTCT
LOC_Os12g43660
Os.53319.1.S1_at--116--2911Chr12:27092441..27092465 (25 bp)
AAGGTTGTTCGCTCTTGCACTAGGG
LOC_Os12g43660
Os.53319.1.S1_at--333--10031Chr12:27092487..27092511 (25 bp)
TAGAGTCGTAGCTGCCTTTTTGTTT
LOC_Os12g43660
Os.53319.1.S1_at--159--6871Chr12:27092518..27092542 (25 bp)
GTTTGGGTCACGTACCATTCACATA
LOC_Os12g43660
Os.53319.1.S1_at--504--3591Chr12:27092533..27092557 (25 bp)
CATTCACATATACTGCTTGGTGTTT
LOC_Os12g43660
Os.53319.1.S1_at--1137--8851Chr12:27092568..27092592 (25 bp)
TGATGCTCTCAGTGGATGGACCAAT
LOC_Os12g43660
Target Sequence 
CTCCGGCGAGCCAAAGCTGTAATAATCATCTTTAATCTAGCTAATGCGTGCAAACGTACTGTGTAATTATCCGGCCGGAT
TAGTAGCTAGTGATCATAAGCAAGAAGAGAGATTGTTCATGAGCTAGCTAGCTCCAACTAATTAATTAGGGGGAAAATAT
TAATTACTACTAATTATATTTACATGTAATAATACTAATTATGTAGATAGAATCATAAGAGGCAAGTTGCAAAGGTTGTT
CGCTCTTGCACTAGGGGATATATATGGCTAGTATTTGTAGAGTCGTAGCTGCCTTTTTGTTTTTTTGGGTTTGGGTCACG
TACCATTCACATATACTGCTTGGTGTTTAAGCAGAATCTGATGCTCTCAGTGGATGGACCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53319.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis