Browse Element(s) Details


Os.40045.1.S1_at

Description gb:CF326815
DB_XREF= gi:33801887
DB_XREF=NACL--01-A19.g1
CLONE=NACL--01-A19
TID=Os.40045.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.40045 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_188604.1 (A.thaliana) receptor-like protein kinase, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g436406/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43620OsAffx.32175.1.S1_at11/1112+27055096..27056542Helix-loop-helix DNA-binding domain containing protein
LOC_Os12g43630Os.4155.1.S1_at10/1112+27061048..27065748Malate dehydrogenase, glyoxysomal precursor, putative, expressed
LOC_Os12g43640Os.40045.1.S1_at6/1112+27075526..27078938Leucine Rich Repeat family protein, expressed
LOC_Os12g43649Os.15614.1.S1_at1/1112+27087329..27088085NA
LOC_Os12g43660Os.53319.1.S1_at11/1112+27088887..27092651Leucine Rich Repeat family protein, expressed
LOC_Os12g43660OsAffx.2477.1.S1_x_at1/1112+27088887..27092651Leucine Rich Repeat family protein, expressed
LOC_Os12g43670Os.47923.2.A1_at9/1112+27098644..27101104Erg28 like protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40045.1.S1_at--543--7851NONE
GGATCGGCCGGGAGTTGGCCATGGT
NONE
Os.40045.1.S1_at--34--1031NONE
AGGTCAAGGTGATCGCCTAGGACTA
NONE
Os.40045.1.S1_at--564--8031Chr12:27078577..27078601 (25 bp)
GGAGTGAACAACGTGGGTCCTTGTT
LOC_Os12g43640
Os.40045.1.S1_at--882--8951Chr12:27078581..27078605 (25 bp)
TGAACAACGTGGGTCCTTGTTGGTC
LOC_Os12g43640
Os.40045.1.S1_at--666--9271Chr12:27078607..27078631 (25 bp)
TCCGATCAGAGAATCAACGGCTCAG
LOC_Os12g43640
Os.40045.1.S1_at--238--231Chr12:27078798..27078822 (25 bp)
ATATTCCAGGTCAATGATGCAGTAG
LOC_Os12g43640
Os.40045.1.S1_at--41--9231Chr12:27078802..27078826 (25 bp)
TCCAGGTCAATGATGCAGTAGCATA
LOC_Os12g43640
Os.40045.1.S1_at--734--9731Chr12:27078808..27078832 (25 bp)
TCAATGATGCAGTAGCATACTAGCA
LOC_Os12g43640
Os.40045.1.S1_at--136--7351NONE
GTGCACAAGTGAGATTTCCACATAA
NONE
Os.40045.1.S1_at--624--8211NONE
GGAATCTGTAGTTAGTACTCGTACT
NONE
Os.40045.1.S1_at--159--2011NONE
ACTCGTACTAGTATGTGTGTAACTG
NONE
Target Sequence 
GGATCGGCCGGGAGTTGGCCATGGTCACTTCGGTGAAGGTCAAGGTGATCGCCTAGGACTAGGAGGCATTTGGNNCNTAA
GGGGGAGTGAACAACGTGGGTCCTTGTTGGTCNTCCGATCAGAGAATCAACGGCTCAGATCAAGCGTGATCAAACACGNA
TAATTCATCGTCGTGGCTCGATCTCAANCGTACTTCATCGATCGGNTGGTNTNCAAAGCTTGTAGTTNTTACATTAGNAA
ATCAGNTTCNGNATGAGATGAANNTAGNANNANATATATGTAGATAGGNNAATCAANCATGAATNATATTCCAGGTCAAT
GATGCAGTAGCATACTAGCATGNGTGCACAAGTGAGATTTCCACATAATAATGGAATCTGTAGTTAGTACTCGTACTAGT
ATGTGTGTAACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40045.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis