Browse Element(s) Details


Os.47923.2.A1_at

Description gb:AK062615.1
DB_XREF= gi:32972633
TID=Os.47923.2
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.47923 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023124O04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-105-B02, full insert sequence.
FL= gb:AK062615.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g436709/11Erg28 like protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43640Os.40045.1.S1_at6/1112+27075526..27078938Leucine Rich Repeat family protein, expressed
LOC_Os12g43649Os.15614.1.S1_at1/1112+27087329..27088085NA
LOC_Os12g43660Os.53319.1.S1_at11/1112+27088887..27092651Leucine Rich Repeat family protein, expressed
LOC_Os12g43660OsAffx.2477.1.S1_x_at1/1112+27088887..27092651Leucine Rich Repeat family protein, expressed
LOC_Os12g43670Os.47923.2.A1_at9/1112+27098644..27101104Erg28 like protein, expressed
LOC_Os12g43680NANA12+27107237..27108141transposon protein, putative, unclassified
LOC_Os12g43700Os.53937.1.S1_x_at11/1112+27112369..27114048SCP-like extracellular protein, expressed
LOC_Os12g43700Os.53937.1.S1_at11/1112+27112369..27114048SCP-like extracellular protein, expressed
LOC_Os12g43700OsAffx.30671.1.S1_x_at2/1112+27112369..27114048SCP-like extracellular protein, expressed
LOC_Os12g43710OsAffx.32179.1.S1_at10/1112+27117322..27118698hypothetical protein
LOC_Os12g43720Os.54341.1.S1_at11/1112+27120899..27126815early-responsive to dehydration protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016021cellular_componentintegral to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47923.2.A1_at--84--3531Chr12:27099022..27099046 (25 bp)
CATGAGTGGTAGTATTTGCTTTGCC
LOC_Os12g43670
Os.47923.2.A1_at--495--211Chr12:27099009..27099033 (25 bp)
ATTTGCTTTGCCAGTGATGTACACA
LOC_Os12g43670
Os.47923.2.A1_at--183--2191Chr12:27098989..27099013 (25 bp)
ACACAGTGTAGGAATCGGGATGCTT
LOC_Os12g43670
Os.47923.2.A1_at--601--3671Chr12:27098944..27098968 (25 bp)
CTTTTCCATGTGGTTCAGTGACACA
LOC_Os12g43670
Os.47923.2.A1_at--471--7831Chr12:27098794..27098818 (25 bp)
GGTAGAAGTTCTGTATCCAATCCAT
LOC_Os12g43670
Os.47923.2.A1_at--1110--571Chr12:27098780..27098804 (25 bp)
ATCCAATCCATCTTACAGGTACCTG
LOC_Os12g43670
Os.47923.2.A1_at--102--9971NONE
TACCTGAACCTGATGTCGCACTTTC
NONE
Os.47923.2.A1_at--695--10311Chr12:27098740..27098764 (25 bp)
TTTCTCCTCTCTGGTACTAATTCTA
LOC_Os12g43670
Os.47923.2.A1_at--20--6971Chr12:27098694..27098718 (25 bp)
GTAGCAGTCAGTATGCACTCTGGAA
LOC_Os12g43670
Os.47923.2.A1_at--815--8511NONE
TGGAAGCTATTTACTCTGACGATGA
NONE
Os.47923.2.A1_at--985--10391Chr12:27098651..27098672 (22 bp)
TTATTTACTCGCACTCTGGAAGTAT
LOC_Os12g43670
Target Sequence 
CATGAGTGGTAGTATTTGCTTTGCCAGTGATGTACACAGTGTAGGAATCGGGATGCTTGAAGAAACATCACAGACNGCNC
TTTTCCATGTGGTTCAGTGACACATTATTTCTATGTACTTTGCCCCCTTATTTTTTTTATCNAAAAAAATTGGTTGTAGC
TTGACAAATGAGAAACCATAACAATAATAATAGCTCAATTCTTGAAATTGTAACGTTGTAACCATAGGGGGGGTAGAAGT
TCTGTATCCAATCCATCTTACAGGTACCTGAACCTGATGTCGCACTTTCTCCTCTCTGGTACTAATTCTACTATACTAGT
AAAATAGTACAGTAGCAGTCAGTATGCACTCTGGAAGCTATTTACTCTGACGATGATTTATTTACTCGCACTCTGGAAGT
AT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47923.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis