Browse Element(s) Details


Os.15614.1.S1_at

Description gb:BI811756
DB_XREF= gi:16577661
DB_XREF=A005E05
CLONE=A005E05
TID=Os.15614.1
CNT=8
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.15614 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_173161.1 (A.thaliana) putative glutathione transferase (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g436491/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43630Os.4155.1.S1_at10/1112+27061048..27065748Malate dehydrogenase, glyoxysomal precursor, putative, expressed
LOC_Os12g43640Os.40045.1.S1_at6/1112+27075526..27078938Leucine Rich Repeat family protein, expressed
LOC_Os12g43649Os.15614.1.S1_at1/1112+27087329..27088085NA
LOC_Os12g43660Os.53319.1.S1_at11/1112+27088887..27092651Leucine Rich Repeat family protein, expressed
LOC_Os12g43660OsAffx.2477.1.S1_x_at1/1112+27088887..27092651Leucine Rich Repeat family protein, expressed
LOC_Os12g43670Os.47923.2.A1_at9/1112+27098644..27101104Erg28 like protein, expressed
LOC_Os12g43680NANA12+27107237..27108141transposon protein, putative, unclassified
LOC_Os12g43700Os.53937.1.S1_x_at11/1112+27112369..27114048SCP-like extracellular protein, expressed
LOC_Os12g43700Os.53937.1.S1_at11/1112+27112369..27114048SCP-like extracellular protein, expressed
LOC_Os12g43700OsAffx.30671.1.S1_x_at2/1112+27112369..27114048SCP-like extracellular protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15614.1.S1_at--1107--4971NONE
GCATCGACGACTAGCCTAACTAGCT
NONE
Os.15614.1.S1_at--486--5791NONE
GACGACTAGCCTAACTAGCTAGCTA
NONE
Os.15614.1.S1_at--1098--3111NONE
AATTTGGTTGTTACTGTCATTTACT
NONE
Os.15614.1.S1_at--772--7911Chr08:24025612..24025631 (20 bp)
GGTTGTTACTGTCATTTACTCATTT
NONE
Os.15614.1.S1_at--817--6771Chr12:27087511..27087530 (20 bp)
GTTACTGTCATTTACTCATTTTATT
LOC_Os12g43649
Os.15614.1.S1_at--480--9891NONE
TACTCATTTTATTTACTACTTGTCG
NONE
Os.15614.1.S1_at--649--9591NONE
TCATTTTATTTACTACTTGTCGTAG
NONE
Os.15614.1.S1_at--11--171NONE
ATTTACTACTTGTCGTAGTTAATCA
NONE
Os.15614.1.S1_at--356--4251NONE
CCGGGCAGGTTCAAGTAGTTTGTAT
NONE
Os.15614.1.S1_at--46--9511NONE
TCTCCGATCATCACTTTGCACTTGA
NONE
Os.15614.1.S1_at--586--9291NONE
TCCGATCATCACTTTGCACTTGAAA
NONE
Target Sequence 
GCATCGACGACTAGCCTAACTAGCTAGCTACTGTGTGTACACCTTAATTTAAATTTGGTTGTTACTGTCATTTACTCATT
TTATTTACTACTTGTCGTAGTTAATCAACGTCGTTCAAAATAACTTGTTTAATTTCGCCGGCCGGGCAGGTTCAAGTAGT
TTGTATTTGAAGTTTANAAAANNNNNNNAACCTGTACTCTCCGATCATCACTTTGCACTTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15614.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis