Browse Element(s) Details


OsAffx.4324.1.S1_at

Description tigr:9633.m01164
TID=OsAffx.4324.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1348011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g13430OsAffx.4322.1.S1_x_at11/115+7430044..7431337hypothetical protein
LOC_Os05g13440Os.37726.1.A1_at11/115+7434895..7440216expressed protein
LOC_Os05g13440Os.27569.1.S1_a_at6/115+7434895..7440216expressed protein
LOC_Os05g13440Os.27569.1.S1_x_at4/115+7434895..7440216expressed protein
LOC_Os05g13450OsAffx.26864.1.S1_at11/115+7441734..7445321hypothetical protein
LOC_Os05g13460NANA5+7446701..7451097retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g13470OsAffx.4323.1.S1_at11/115+7451909..7455013hypothetical protein
LOC_Os05g13470OsAffx.4323.2.S1_s_at11/115+7451909..7455013hypothetical protein
LOC_Os05g13480OsAffx.4324.1.S1_at11/115+7455783..7456355hypothetical protein
LOC_Os05g13490OsAffx.26865.1.S1_x_at11/115+7457337..7458666BURP domain containing protein
LOC_Os05g13490Os.28427.2.S1_x_at1/115+7457337..7458666BURP domain containing protein
LOC_Os05g13500OsAffx.14671.2.S1_at10/115+7461250..7463093hypothetical protein
LOC_Os05g13510OsAffx.7916.1.S1_at6/115+7465943..7470265retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g13520Os.7232.1.S1_at10/115+7472015..7477633ABC-2 type transporter family protein, expressed
LOC_Os05g13530OsAffx.24469.1.S1_x_at1/115+7478600..7479155hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004014molecular_functionadenosylmethionine decarboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4324.1.S1_at--560--2191Chr05:7455935..7455959 (25 bp)
ACACACTGACTTCGCGGACGAGGTG
LOC_Os05g13480
OsAffx.4324.1.S1_at--479--9311Chr05:7455979..7456003 (25 bp)
TCCCTGGTGAGCTTCTACTCTTCCG
LOC_Os05g13480
OsAffx.4324.1.S1_at--189--4131Chr05:7456005..7456029 (25 bp)
CGCTCCGCCGTGATGTCATGGTCGT
LOC_Os05g13480
OsAffx.4324.1.S1_at--205--591Chr05:7456085..7456109 (25 bp)
ATCCAAGTCCACCTTCTCGGCAAGG
LOC_Os05g13480
OsAffx.4324.1.S1_at--54--5191Chr05:7456104..7456128 (25 bp)
GCAAGGCCCTTGACAACCTGTGGAT
LOC_Os05g13480
OsAffx.4324.1.S1_at--132--8971Chr05:7456114..7456138 (25 bp)
TGACAACCTGTGGATGGCCGGATAA
LOC_Os05g13480
OsAffx.4324.1.S1_at--851--8051Chr05:7456141..7456165 (25 bp)
GGAGACCGTGCCTATGTGGACGCCT
LOC_Os05g13480
OsAffx.4324.1.S1_at--472--10091Chr05:7456153..7456177 (25 bp)
TATGTGGACGCCTCACCTCGGGTGG
LOC_Os05g13480
OsAffx.4324.1.S1_at--1039--9691Chr05:7456209..7456233 (25 bp)
TCACACGGCTCGTCGTACTGCTTCA
LOC_Os05g13480
OsAffx.4324.1.S1_at--792--6991Chr05:7456247..7456271 (25 bp)
GTACTCTGCCACGATGTACATTCGG
LOC_Os05g13480
OsAffx.4324.1.S1_at--1145--1871Chr05:7456257..7456281 (25 bp)
ACGATGTACATTCGGCCGCCGGCAA
LOC_Os05g13480
Target Sequence 
ACACACTGACTTCGCGGACGAGGTGGCGTACCTCGACAGCGCCCTCCCTGGTGAGCTTCTACTCTTCCGCCGCTCCGCCG
TGATGTCATGGTCGTCGCCCGACGCCTCGCCCAGGTGGCACGTCTACTCGGCGTCTTCGTCGTCGTCGTCATCCAAGTCC
ACCTTCTCGGCAAGGCCCTTGACAACCTGTGGATGGCCGGATAAGGGGAGACCGTGCCTATGTGGACGCCTCACCTCGGG
TGGGACCCCACTCCCGGCAACCATCCTCCACTCGTCACACGGCTCGTCGTACTGCTTCAGCCTCCACTCGCCGTACTCTG
CCACGATGTACATTCGGCCGCCGGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4324.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis