Browse Element(s) Details


Os.7232.1.S1_at

Description gb:AK068591.1
DB_XREF= gi:32978608
TID=Os.7232.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7232 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023051G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013154I12, full insert sequence.
FL= gb:AK070374.1 gb:AK068591.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1352010/11ABC-2 type transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g13460NANA5+7446701..7451097retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g13470OsAffx.4323.1.S1_at11/115+7451909..7455013hypothetical protein
LOC_Os05g13470OsAffx.4323.2.S1_s_at11/115+7451909..7455013hypothetical protein
LOC_Os05g13480OsAffx.4324.1.S1_at11/115+7455783..7456355hypothetical protein
LOC_Os05g13490OsAffx.26865.1.S1_x_at11/115+7457337..7458666BURP domain containing protein
LOC_Os05g13490Os.28427.2.S1_x_at1/115+7457337..7458666BURP domain containing protein
LOC_Os05g13500OsAffx.14671.2.S1_at10/115+7461250..7463093hypothetical protein
LOC_Os05g13510OsAffx.7916.1.S1_at6/115+7465943..7470265retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g13520Os.7232.1.S1_at10/115+7472015..7477633ABC-2 type transporter family protein, expressed
LOC_Os05g13530OsAffx.24469.1.S1_x_at1/115+7478600..7479155hypothetical protein
LOC_Os05g13540OsAffx.4325.1.S1_at11/115+7487913..7489303hypothetical protein
LOC_Os05g13550OsAffx.4326.1.S1_at11/115+7498227..7498694hypothetical protein
LOC_Os05g13560NANA5+7500671..7500967hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0010025biological_processwax biosynthesis
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7232.1.S1_at--1041--9691Chr05:7472418..7472442 (25 bp)
TCAACTCTCCAATGCCATACTGAAG
LOC_Os05g13520
Os.7232.1.S1_at--101--9371Chr05:7472327..7472351 (25 bp)
TCGAGCAAGAAGAGGCCGGTAGTTT
LOC_Os05g13520
Os.7232.1.S1_at--797--6891Chr05:7472309..7472333 (25 bp)
GTAGTTTGGGCGACCTTGCGACGAC
LOC_Os05g13520
Os.7232.1.S1_at--107--10191Chr05:7472261..7472285 (25 bp)
TATAGATGGTGTTCGTGTGCCACGA
LOC_Os05g13520
Os.7232.1.S1_at--409--3091Chr05:7472225..7472249 (25 bp)
AATACTTGTGTATGTGTTGCCCTTG
LOC_Os05g13520
Os.7232.1.S1_at--243--6691Chr05:7472210..7472234 (25 bp)
GTTGCCCTTGGATTGTTTTCAGCTC
LOC_Os05g13520
Os.7232.1.S1_at--494--3791Chr05:7472188..7472212 (25 bp)
CTCGTTGGAAGCTGGAAGGGTTCAT
LOC_Os05g13520
Os.7232.1.S1_at--449--7671Chr05:7472171..7472195 (25 bp)
GGGTTCATAAACTGATAGCGTATTC
LOC_Os05g13520
Os.7232.1.S1_at--42--9911Chr05:7472124..7472148 (25 bp)
TACTGTAAGAACTCGGTCTCTGTGA
LOC_Os05g13520
Os.7232.1.S1_at--428--7811Chr05:7472110..7472134 (25 bp)
GGTCTCTGTGACCAATACACATACA
LOC_Os05g13520
Os.7232.1.S1_at--279--6411Chr05:7472015..7472039 (25 bp)
GATCTGGTTAGAACATGCTTGTGCT
NONE
Target Sequence 
TCAACTCTCCAATGCCATACTGAAGAACTGTTATTACAAGTTACAACTACTACTACTGATGATGATGAAGATGAAGATGA
TGATTGATCGATCGAGCAAGAAGAGGCCGGTAGTTTGGGCGACCTTGCGACGACGATGACAACAAAGATGATGATCATAT
AGATGGTGTTCGTGTGCCACGAATCGATTAATTAATACTTGTGTATGTGTTGCCCTTGGATTGTTTTCAGCTCGTTGGAA
GCTGGAAGGGTTCATAAACTGATAGCGTATTCTTTTTTTTAAGATCTTGTATTTTACTGTAAGAACTCGGTCTCTGTGAC
CAATACACATACAAAAAGGATGCTGTGTAGTTGAGTGTTTGTTGTTTCTTGTTTTTTTCCCTGATTATTTATNTGGCCAT
GTCGATCTGGTTAGAACATGCTTGTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7232.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis