Browse Element(s) Details


Os.38047.2.S1_x_at

Description gb:CB659522
DB_XREF= gi:29663247
DB_XREF=OSJNEc16J13.r
CLONE=OSJNEc16J13
TID=Os.38047.2
CNT=9
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.38047 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative RNA-binding protein (OSJNBa0028C16.8), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0613011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g06090OsAffx.20742.1.S1_at11/1110+3074744..3081593Protein kinase domain containing protein
LOC_Os10g06100OsAffx.20743.1.S1_at11/1110+3089631..3091177retrotransposon protein, putative, unclassified
LOC_Os10g06110OsAffx.8508.1.S1_at11/1110+3094723..3097486retrotransposon protein, putative, unclassified
LOC_Os10g06130Os.38047.1.S1_at11/1110+3097981..3103021RNA recognition motif family protein, expressed
LOC_Os10g06130Os.38047.2.S1_x_at11/1110+3097981..3103021RNA recognition motif family protein, expressed
LOC_Os10g06140OsAffx.20742.2.S1_x_at11/1110+3106167..3111329Protein kinase domain containing protein, expressed
LOC_Os10g06140OsAffx.20742.3.S1_x_at7/1110+3106167..3111329Protein kinase domain containing protein, expressed
LOC_Os10g06140OsAffx.20742.4.S1_x_at5/1110+3106167..3111329Protein kinase domain containing protein, expressed
LOC_Os10g06140OsAffx.29386.2.S1_at1/1110+3106167..3111329Protein kinase domain containing protein, expressed
LOC_Os10g06150OsAffx.6589.1.S1_at11/1110+3118373..3119911NA
LOC_Os10g06160OsAffx.20741.1.S1_at11/1110+3125470..3126289transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38047.2.S1_x_at--1107--6711Chr10:3098386..3098429 (25 bp)
GTTCTGCAACAACCAGGTGGAATCC
LOC_Os10g06130
Os.38047.2.S1_x_at--760--10591Chr10:3098385..3098405 (21 bp)
TTCTGCAACAACCAGGTGGAATCCC
LOC_Os10g06130
Os.38047.2.S1_x_at--11--10151Chr10:3098284..3098308 (25 bp)
TATCGCCCTTACTAGCTTTTTCGTT
LOC_Os10g06130
Os.38047.2.S1_x_at--502--4432Chr10:3098245..3098269 (25 bp)
GCCATCCAGCCATCACGCAATGTGA
LOC_Os10g06130
Os.38047.2.S1_x_at--287--9692Chr10:3098233..3098257 (25 bp)
TCACGCAATGTGATGGATTTCTTAA
LOC_Os10g06130
Os.38047.2.S1_x_at--44--5191Chr10:3098229..3098253 (25 bp)
GCAATGTGATGGATTTCTTAACCTA
LOC_Os10g06130
Os.38047.2.S1_x_at--125--791Chr10:3098226..3098250 (25 bp)
ATGTGATGGATTTCTTAACCTAAAG
LOC_Os10g06130
Os.38047.2.S1_x_at--473--7391Chr10:3098224..3098248 (25 bp)
GTGATGGATTTCTTAACCTAAAGAA
LOC_Os10g06130
Os.38047.2.S1_x_at--513--3571Chr10:3098169..3098193 (25 bp)
CATAACACCTGCAATTGCGCAAGAC
LOC_Os10g06130
Os.38047.2.S1_x_at--598--8731Chr10:3098111..3098135 (25 bp)
TGTCATGCATGTGGTGCTTGTGACT
LOC_Os10g06130
Os.38047.2.S1_x_at--963--9611Chr10:3098109..3098133 (25 bp)
TCATGCATGTGGTGCTTGTGACTTG
LOC_Os10g06130
Target Sequence 
GTTCTGCAACAACCAGGTGGAATCCCNCCTCCGCCCCCACCGCGNCGGGGTGACCGGAGGGATGGTGGCAGCAGAGGTGG
CGAAGGGAGTCATGGCCGGCGATATCGCCCTTACTAGCTTTTTCGTTCCCTTGGTNCTGCCGCCATCCAGCCATCACGCA
ATGTGATGGATTTCTTAACCTAAAGAAACAAGATAGAAGNNNNNNNNCTTGTAACCCTGTTCCAGCATAACACCTGCAAT
TGCGCAAGACNTGTACCGTNTTCTTTTTTCAGTTATATTTATNTGTCATGCATGTGGTGCTTGTGACTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38047.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis