Browse Element(s) Details


OsAffx.20742.2.S1_x_at

Description tigr:9638.m00529
TID=OsAffx.20742.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Putative wall-associated protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0614011/11Protein kinase domain containing protein, expressed
LOC_Os10g060308/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g06090OsAffx.20742.1.S1_at11/1110+3074744..3081593Protein kinase domain containing protein
LOC_Os10g06100OsAffx.20743.1.S1_at11/1110+3089631..3091177retrotransposon protein, putative, unclassified
LOC_Os10g06110OsAffx.8508.1.S1_at11/1110+3094723..3097486retrotransposon protein, putative, unclassified
LOC_Os10g06130Os.38047.1.S1_at11/1110+3097981..3103021RNA recognition motif family protein, expressed
LOC_Os10g06130Os.38047.2.S1_x_at11/1110+3097981..3103021RNA recognition motif family protein, expressed
LOC_Os10g06140OsAffx.20742.2.S1_x_at11/1110+3106167..3111329Protein kinase domain containing protein, expressed
LOC_Os10g06140OsAffx.20742.3.S1_x_at7/1110+3106167..3111329Protein kinase domain containing protein, expressed
LOC_Os10g06140OsAffx.20742.4.S1_x_at5/1110+3106167..3111329Protein kinase domain containing protein, expressed
LOC_Os10g06140OsAffx.29386.2.S1_at1/1110+3106167..3111329Protein kinase domain containing protein, expressed
LOC_Os10g06150OsAffx.6589.1.S1_at11/1110+3118373..3119911NA
LOC_Os10g06160OsAffx.20741.1.S1_at11/1110+3125470..3126289transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20742.2.S1_x_at--761--10731Chr10:3106688..3106712 (25 bp)
TTGGGCTTACGCCTAAACATCGCAA
LOC_Os10g06140
OsAffx.20742.2.S1_x_at--916--9791Chr10:3106675..3106699 (25 bp)
TAAACATCGCAATTGAATCAGCTGA
LOC_Os10g06140
OsAffx.20742.2.S1_x_at--126--5252Chr10:3049177..3049201 (25 bp)
GAATCAGCTGAAGGTCTAAGGTACA
LOC_Os10g06030
OsAffx.20742.2.S1_x_at--646--7012Chr10:3049197..3049221 (25 bp)
GTACATGCACTCATCAACAAGTCGT
LOC_Os10g06030
OsAffx.20742.2.S1_x_at--347--6811Chr10:3106566..3106590 (25 bp)
GTTTATCCCCAAGATCTCATATTTT
LOC_Os10g06140
OsAffx.20742.2.S1_x_at--540--6532Chr10:3049327..3049351 (25 bp)
GATTTCACCATGTTTGTTGTAGGAA
LOC_Os10g06030
OsAffx.20742.2.S1_x_at--466--6352Chr10:3049366..3049390 (25 bp)
GATCCAGTATTCCATAAGACCGGCC
LOC_Os10g06030
OsAffx.20742.2.S1_x_at--377--3572Chr10:3049378..3049402 (25 bp)
CATAAGACCGGCCATTTAACACAAA
LOC_Os10g06030
OsAffx.20742.2.S1_x_at--279--8052Chr10:3049423..3049447 (25 bp)
GGAGTTGTACTGCTAGAGCTCATAT
LOC_Os10g06030
OsAffx.20742.2.S1_x_at--1113--9972Chr10:3049479..3049503 (25 bp)
TAGCCTCATCATTGAGTTCCAAAAT
LOC_Os10g06030
OsAffx.20742.2.S1_x_at--2--6072Chr10:3049492..3049516 (25 bp)
GAGTTCCAAAATGCCTATGATCAAG
LOC_Os10g06030
Target Sequence 
TTGGGCTTACGCCTAAACATCGCAATTGAATCAGCTGAAGGTCTAAGGTACATGCACTCATCAACAAGTCGTACCATACG
ACATGGTGATGTCAAGCCAGCCAACATACTTTTAACAGATAAGTTTATCCCCAAGATCTCATATTTTGGGACATCTAAGC
TTCTTACTGTAGACAAAGATTTCACCATGTTTGTTGTAGGAAGCATGGGCTACATAGATCCAGTATTCCATAAGACCGGC
CATTTAACACAAAAGAGTGATGTATACAGTTTTGGAGTTGTACTGCTAGAGCTCATATGTAGGAAGCCAACAATATATGG
TGAAAATTGTAGCCTCATCATTGAGTTCCAAAATGCCTATGATCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20742.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis