Browse Element(s) Details


Os.36118.1.S1_at

Description gb:AK064449.1
DB_XREF= gi:32974467
TID=Os.36118.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.36118 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-110-F04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-110-F04, full insert sequence.
FL= gb:AK064449.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2469011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g24650NANA10+12337868..12340181hypothetical protein
LOC_Os10g24660OsAffx.199.1.S1_at11/1110+12341026..12341781retrotransposon protein, putative, unclassified
LOC_Os10g24670NANA10+12345704..12347092retrotransposon protein, putative, unclassified
LOC_Os10g24680NANA10+12349157..12349750transposon protein, putative, unclassified
LOC_Os10g24690Os.36118.1.S1_at11/1110+12358036..12359032expressed protein
LOC_Os10g24700OsAffx.31828.1.S1_at2/1110+12363145..12370001retrotransposon protein, putative, unclassified
LOC_Os10g24700OsAffx.20615.1.S1_at1/1110+12363145..12370001retrotransposon protein, putative, unclassified
LOC_Os10g24700OsAffx.10371.1.S1_at1/1110+12363145..12370001retrotransposon protein, putative, unclassified
LOC_Os10g24700OsAffx.16111.1.S1_at1/1110+12363145..12370001retrotransposon protein, putative, unclassified
LOC_Os10g24700OsAffx.20604.2.S1_at1/1110+12363145..12370001retrotransposon protein, putative, unclassified
LOC_Os10g24700OsAffx.27937.1.S1_at1/1110+12363145..12370001retrotransposon protein, putative, unclassified
LOC_Os10g24710OsAffx.18381.1.S1_at10/1110+12374402..12379530expressed protein
LOC_Os10g24710OsAffx.22250.2.S1_x_at1/1110+12374402..12379530expressed protein
LOC_Os10g24710OsAffx.28492.1.S1_at1/1110+12374402..12379530expressed protein
LOC_Os10g24710Os.46610.1.A1_x_at1/1110+12374402..12379530expressed protein
LOC_Os10g24710Os.38751.1.A1_at1/1110+12374402..12379530expressed protein
LOC_Os10g24720OsAffx.20650.2.S1_at11/1110+12381939..12383147retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36118.1.S1_at--518--9651Chr10:12358595..12358619 (25 bp)
TCAGATGCTCTTGGGCGCATGGGCA
LOC_Os10g24690
Os.36118.1.S1_at--125--4531Chr10:12358552..12358576 (25 bp)
GCCGCGTCCTCAAGACTCTGAAGAA
LOC_Os10g24690
Os.36118.1.S1_at--282--5691Chr10:12358539..12358563 (25 bp)
GACTCTGAAGAATTACCCGGATGGC
LOC_Os10g24690
Os.36118.1.S1_at--169--8051Chr10:12358503..12358527 (25 bp)
GGAGATACTCTTCTACAACACTCTT
LOC_Os10g24690
Os.36118.1.S1_at--45--9911Chr10:12358498..12358522 (25 bp)
TACTCTTCTACAACACTCTTCTGGG
LOC_Os10g24690
Os.36118.1.S1_at--675--4571Chr10:12358455..12358479 (25 bp)
GCGCGAGGCCATACCAGCCGTGATA
LOC_Os10g24690
Os.36118.1.S1_at--1021--6211Chr10:12358451..12358475 (25 bp)
GAGGCCATACCAGCCGTGATAACCT
LOC_Os10g24690
Os.36118.1.S1_at--1077--1671Chr10:12358440..12358464 (25 bp)
AGCCGTGATAACCTCCGCTGACCTG
LOC_Os10g24690
Os.36118.1.S1_at--703--8911Chr10:12358422..12358446 (25 bp)
TGACCTGCTCGTGTTCGACAACGGG
LOC_Os10g24690
Os.36118.1.S1_at--297--3631Chr10:12358311..12358335 (25 bp)
CTTGACTGGGCGTGAGATGCACCGC
LOC_Os10g24690
Os.36118.1.S1_at--286--6331Chr10:12358296..12358320 (25 bp)
GATGCACCGCCTCGTTAAGAAGGTC
LOC_Os10g24690
Target Sequence 
TCAGATGCTCTTGGGCGCATGGGCAAGATGATGCTGCAGGCGCGCCGCGTCCTCAAGACTCTGAAGAATTACCCGGATGG
CGAGGAGGGNATTGGAGATACTCTTCTACAACACTCTTCTGGGGGNAGGCGCTCACCAGGGCGCGCGAGGCCATACCAGC
CGTGATAACCTCCGCTGACCTGCTCGTGTTCGACAACGGGGAGGTGCGGCTGATGGCGCTCTCCCTCGCTCACCAAGCGA
TGAGCACCGTCGAGGCTTGCCTCGGTGCTGTCCACGAGGGAAAGGGCTTGACTGGGCGTGAGATGCACCGCCTCGTTAAG
AAGGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36118.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis