Browse Element(s) Details


Os.4923.1.S1_at

Description gb:AK072677.1
DB_XREF= gi:32982700
TID=Os.4923.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4923 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023136A15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023136A15, full insert sequence.
FL= gb:AK072677.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2171011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g21660Os.53212.1.S1_at10/114+12227812..1223397826S protease regulatory subunit 6A homolog, putative, expressed
LOC_Os04g21670OsAffx.25936.1.S1_s_at7/114+12235357..12235920transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g21670OsAffx.25936.7.S1_s_at5/114+12235357..12235920transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g21680NANA4+12237661..12240933transposon protein, putative, unclassified
LOC_Os04g21690NANA4+12241721..12247641retrotransposon protein, putative, unclassified
LOC_Os04g21700NANA4+12248783..12250390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g21710Os.4923.1.S1_at11/114+12254502..12256920expressed protein
LOC_Os04g21720OsAffx.13909.1.S1_at11/114+12265464..12265940hypothetical protein
LOC_Os04g21730OsAffx.13910.1.S1_at10/114+12272443..12273748XH domain containing protein
LOC_Os04g21740OsAffx.15781.4.S1_x_at11/114+12275518..12278170hypothetical protein
LOC_Os04g21740OsAffx.15781.5.S1_x_at7/114+12275518..12278170hypothetical protein
LOC_Os04g21750OsAffx.30435.1.S1_at3/114+12281187..12287119retrotransposon protein, putative, unclassified
LOC_Os04g21750OsAffx.20553.1.S1_at3/114+12281187..12287119retrotransposon protein, putative, unclassified
LOC_Os04g21750OsAffx.22699.1.S1_x_at2/114+12281187..12287119retrotransposon protein, putative, unclassified
LOC_Os04g21750OsAffx.16111.1.S1_at1/114+12281187..12287119retrotransposon protein, putative, unclassified
LOC_Os04g21750OsAffx.19776.1.S1_at1/114+12281187..12287119retrotransposon protein, putative, unclassified
LOC_Os04g21750OsAffx.8201.1.S1_x_at1/114+12281187..12287119retrotransposon protein, putative, unclassified
LOC_Os04g21750OsAffx.199.1.S1_at1/114+12281187..12287119retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4923.1.S1_at--494--8711Chr04:12254728..12254752 (25 bp)
TGTCCTTCAAGGAATAGTGCTCAGC
LOC_Os04g21710
Os.4923.1.S1_at--188--291Chr04:12254715..12254739 (25 bp)
ATAGTGCTCAGCCTACAATGCCCAT
LOC_Os04g21710
Os.4923.1.S1_at--856--4171Chr04:12254695..12254719 (25 bp)
CCCATGCCCATCTCAGGATGAGTTA
LOC_Os04g21710
Os.4923.1.S1_at--494--7991Chr04:12254680..12254704 (25 bp)
GGATGAGTTACTCCTGCCATGAAAA
LOC_Os04g21710
Os.4923.1.S1_at--648--6771Chr04:12254674..12254698 (25 bp)
GTTACTCCTGCCATGAAAATATATC
LOC_Os04g21710
Os.4923.1.S1_at--788--5511Chr04:12254660..12254684 (25 bp)
GAAAATATATCCAATCACGAGTTAT
LOC_Os04g21710
Os.4923.1.S1_at--473--9211Chr04:12254651..12254675 (25 bp)
TCCAATCACGAGTTATGTTCATATG
LOC_Os04g21710
Os.4923.1.S1_at--48--6751Chr04:12254635..12254659 (25 bp)
GTTCATATGATGAGTTCCTTGGTTC
LOC_Os04g21710
Os.4923.1.S1_at--939--7891Chr04:12254615..12254639 (25 bp)
GGTTCATTGTATTCGATGTGGTAAT
LOC_Os04g21710
Os.4923.1.S1_at--1078--8652Chr05:1492325..1492575 (25 bp)
TGTGGTAATTTTTTTTCCCTCAATG
NONE
Os.4923.1.S1_at--971--10291Chr04:12254586..12254610 (25 bp)
TTTCCCTCAATGGTCATTGCATTTG
LOC_Os04g21710
Target Sequence 
TGTCCTTCAAGGAATAGTGCTCAGCCTACAATGCCCATGCCCATCTCAGGATGAGTTACTCCTGCCATGAAAATATATCC
AATCACGAGTTATGTTCATATGATGAGTTCCTTGGTTCATTGTATTCGATGTGGTAATTTTTTTTCCCTCAATGGTCATT
GCATTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4923.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis