Browse Element(s) Details


OsAffx.30435.1.S1_at

Description tigr:9638.m01431
TID=OsAffx.30435.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1738011/11hypothetical protein
LOC_Os04g217503/11retrotransposon protein, putative, unclassified
LOC_Os07g246403/11retrotransposon protein, putative, unclassified
LOC_Os04g267001/11retrotransposon protein, putative, unclassified
LOC_Os11g188101/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g17340NANA10+8397189..8403744retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17350OsAffx.31869.5.S1_x_at2/1110+8405930..8411914retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17350Os.10731.2.A1_at2/1110+8405930..8411914retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17350Os.47114.1.S1_x_at1/1110+8405930..8411914retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17360NANA10+8413909..8420575retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17370OsAffx.22896.1.S1_x_at1/1110+8421738..8426407retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17380OsAffx.30435.1.S1_at11/1110+8427941..8429011hypothetical protein
LOC_Os10g17390OsAffx.30436.1.S1_at11/1110+8430995..8433005hypothetical protein
LOC_Os10g17400NANA10+8437280..8442540retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17410OsAffx.278.1.S1_at11/1110+8443823..8447820retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17430OsAffx.8303.1.S1_at11/1110+8449734..8450321retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17440OsAffx.20549.1.S1_at11/1110+8451569..8452468retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30435.1.S1_at--44--1211Chr10:8428502..8428526 (25 bp)
AGTTGGTTCAAGCTCAGCTCAAGGC
LOC_Os10g17380
OsAffx.30435.1.S1_at--523--1571Chr10:8428492..8428516 (25 bp)
AGCTCAGCTCAAGGCGATAAAGGTA
LOC_Os10g17380
OsAffx.30435.1.S1_at--176--8253Chr11:10650235..10650255 (21 bp)
GGCAGTGGATTACAACCACAGTTTG
LOC_Os11g18810
OsAffx.30435.1.S1_at--650--2493Chr07:14016739..14016763 (25 bp)
AACAGGGTTCTTCTAACACACCATC
LOC_Os07g24640
OsAffx.30435.1.S1_at--158--10572Chr07:14016749..14016768 (20 bp)
TTCTAACACACCATCAACTCTGCTG
LOC_Os07g24640
OsAffx.30435.1.S1_at--1033--371Chr10:8428160..8428184 (25 bp)
ATCAACTCTGCTGATGGCACCGGTT
LOC_Os10g17380
OsAffx.30435.1.S1_at--566--8872Chr07:14016773..14016796 (24 bp)
TGATGGCACCGGTTACAACTTCTGC
LOC_Os07g24640
OsAffx.30435.1.S1_at--1003--7871Chr10:8428139..8428163 (25 bp)
GGTTACAACTTCTGCTCCAGCTGCA
LOC_Os10g17380
OsAffx.30435.1.S1_at--328--4391Chr10:8428089..8428113 (25 bp)
CCAATCCTCGATTGTATACAAGAGA
LOC_Os10g17380
OsAffx.30435.1.S1_at--837--3293Chr04:15566802..15566826 (25 bp)
CACAGCATGGTGGACAAAACATCAA
LOC_Os04g26700
OsAffx.30435.1.S1_at--764--9071Chr10:8428010..8428034 (25 bp)
TGCTATGTTCTTTCCAAATCCACCA
LOC_Os10g17380
Target Sequence 
AGTTGGTTCAAGCTCAGCTCAAGGCGATAAAGGTACTGCTGGTGAACCAGGCGACAAAGATGGCAGTGGATTACAACCAC
AGTTTGACAACTTCCAAGATCGGATTGACTACGCTATGCAACATGCTTTGATCAATCAATCAGGAGTCTTAGTCAATACT
TTAACCAACATGGTGAAAACAATGGTTGATGGCACAATAGCTGAGCATCAAGTTACAGAACCAGTGTATTTGCCAGGTGG
TGTTTTTCCAAACTATAAGCCTTTGGTTACAGGCAATCAACAGGGTTCTTCTAACACACCATCAACTCTGCTGATGGCAC
CGGTTACAACTTCTGCTCCAGCTGCACCATCATCGGCACAAAGGCAAATGACCAATCCTCGATTGTATACAAGAGAACAG
CCACAGCATGGTGGACAAAACATCAATCGGCTAACTCAGGAGCAGGTGGCTGCTATGTTCTTTCCAAATCCACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30435.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis