Browse Element(s) Details


OsAffx.30436.1.S1_at

Description tigr:9638.m01432
TID=OsAffx.30436.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1739011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g17350OsAffx.31869.5.S1_x_at2/1110+8405930..8411914retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17350Os.10731.2.A1_at2/1110+8405930..8411914retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17350Os.47114.1.S1_x_at1/1110+8405930..8411914retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17360NANA10+8413909..8420575retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17370OsAffx.22896.1.S1_x_at1/1110+8421738..8426407retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17380OsAffx.30435.1.S1_at11/1110+8427941..8429011hypothetical protein
LOC_Os10g17390OsAffx.30436.1.S1_at11/1110+8430995..8433005hypothetical protein
LOC_Os10g17400NANA10+8437280..8442540retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17410OsAffx.278.1.S1_at11/1110+8443823..8447820retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17430OsAffx.8303.1.S1_at11/1110+8449734..8450321retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17440OsAffx.20549.1.S1_at11/1110+8451569..8452468retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g17454Os.7927.2.S1_x_at11/1110+8455650..8465123RNA recognition motif family protein, expressed
LOC_Os10g17454Os.7927.1.S1_a_at11/1110+8455650..8465123RNA recognition motif family protein, expressed
LOC_Os10g17454Os.7927.1.S1_at11/1110+8455650..8465123RNA recognition motif family protein, expressed
LOC_Os10g17454Os.52390.1.S1_at11/1110+8455650..8465123RNA recognition motif family protein, expressed
LOC_Os10g17454OsAffx.30437.1.S1_x_at10/1110+8455650..8465123RNA recognition motif family protein, expressed
LOC_Os10g17454OsAffx.30437.1.S1_at3/1110+8455650..8465123RNA recognition motif family protein, expressed
LOC_Os10g17454Os.54271.1.S1_at1/1110+8455650..8465123RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30436.1.S1_at--261--8511Chr10:8432434..8432458 (25 bp)
TGGACACCTACAAGGCCAGGGTTCG
LOC_Os10g17390
OsAffx.30436.1.S1_at--882--1791Chr10:8432502..8432526 (25 bp)
ACCCTCACGGGTTCGCTAAAAGATG
LOC_Os10g17390
OsAffx.30436.1.S1_at--140--2911Chr10:8432615..8432639 (25 bp)
AAGGATCCTGGATGGACTTCGCCGG
LOC_Os10g17390
OsAffx.30436.1.S1_at--610--2051Chr10:8432630..8432654 (25 bp)
ACTTCGCCGGGAGCTTGCACTGGAG
LOC_Os10g17390
OsAffx.30436.1.S1_at--706--10731Chr10:8432713..8432737 (25 bp)
TTGCACTGACGGACTTGGGAGCCAA
LOC_Os10g17390
OsAffx.30436.1.S1_at--1140--3271Chr10:8432772..8432796 (25 bp)
CAAACCTTCATGGAGTGGACCCAGC
LOC_Os10g17390
OsAffx.30436.1.S1_at--819--1051Chr10:8432809..8432833 (25 bp)
AGAGGTTCGGCCTGAATCCAGACGA
LOC_Os10g17390
OsAffx.30436.1.S1_at--351--4111Chr10:8432831..8432855 (25 bp)
CGAACTTCTGAACTACTACTGCGGT
LOC_Os10g17390
OsAffx.30436.1.S1_at--854--2011Chr10:8432845..8432869 (25 bp)
ACTACTGCGGTTATTGTGCCAAGGG
LOC_Os10g17390
OsAffx.30436.1.S1_at--988--6711Chr10:8432870..8432894 (25 bp)
GTTCGGCCTTGATCCAGCGAGAGAA
LOC_Os10g17390
OsAffx.30436.1.S1_at--1162--8591Chr10:8432912..8432936 (25 bp)
TGGTGAACTTGTAGCCATTTCGCGC
LOC_Os10g17390
Target Sequence 
TGGACACCTACAAGGCCAGGGTTCGCTCCTTGGAGGGGGAGCTCAGCCGAAAGGAGCTTGAGAAGGAAACCCTCACGGGT
TCGCTAAAAGATGCGAACTCTGAGATCCGAAAACTCCGGCTTGAGCTCGAGAGAGAGAAGAAAGACAACCAGGGTCTTAT
GACCTACTACAATGACTCCGAAAGGATCCTGGATGGACTTCGCCGGGAGCTTGCACTGGAGAGGGCTGCGACGAAGGCTG
TGACCGATGAGGCAAAGACAGCGTGCCACAGTCTTCGTCTTGCACTGACGGACTTGGGAGCCAAGGTCAGCGACGTCCCA
GCCGAAGATGCGTCCGCCCAAACCTTCATGGAGTGGACCCAGCAAGCGGGTGGCAAGAGGTTCGGCCTGAATCCAGACGA
ACTTCTGAACTACTACTGCGGTTATTGTGCCAAGGGGTTCGGCCTTGATCCAGCGAGAGAAGTACTCGATGGCTACAATG
GTGAACTTGTAGCCATTTCGCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30436.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis