Browse Element(s) Details


Os.52390.1.S1_at

Description gb:AK066810.1
DB_XREF= gi:32976828
TID=Os.52390.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52390 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013081P08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013081P08, full insert sequence.
FL= gb:AK066810.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1745411/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g17390OsAffx.30436.1.S1_at11/1110+8430995..8433005hypothetical protein
LOC_Os10g17400NANA10+8437280..8442540retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17410OsAffx.278.1.S1_at11/1110+8443823..8447820retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17430OsAffx.8303.1.S1_at11/1110+8449734..8450321retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17440OsAffx.20549.1.S1_at11/1110+8451569..8452468retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g17454Os.7927.2.S1_x_at11/1110+8455650..8465123RNA recognition motif family protein, expressed
LOC_Os10g17454Os.7927.1.S1_a_at11/1110+8455650..8465123RNA recognition motif family protein, expressed
LOC_Os10g17454Os.7927.1.S1_at11/1110+8455650..8465123RNA recognition motif family protein, expressed
LOC_Os10g17454Os.52390.1.S1_at11/1110+8455650..8465123RNA recognition motif family protein, expressed
LOC_Os10g17454OsAffx.30437.1.S1_x_at10/1110+8455650..8465123RNA recognition motif family protein, expressed
LOC_Os10g17454OsAffx.30437.1.S1_at3/1110+8455650..8465123RNA recognition motif family protein, expressed
LOC_Os10g17454Os.54271.1.S1_at1/1110+8455650..8465123RNA recognition motif family protein, expressed
LOC_Os10g17470OsAffx.20548.1.S1_at1/1110+8473882..8477208retrotransposon protein, putative, unclassified, expressed
LOC_Os10g17489Os.9840.1.S1_at11/1110+8483906..8496342UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os10g17489OsAffx.22947.2.S1_x_at8/1110+8483906..8496342UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os10g17489OsAffx.22947.1.S1_x_at7/1110+8483906..8496342UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os10g17489OsAffx.22947.3.S1_x_at4/1110+8483906..8496342UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os10g17489OsAffx.22947.5.S1_x_at3/1110+8483906..8496342UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007623biological_processcircadian rhythm
GO:0005634cellular_componentnucleus
GO:0005739cellular_componentmitochondrion
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52390.1.S1_at--560--9031Chr10:8462531..8462555 (25 bp)
TGCACTAATGCTCATAGCCATCTCT
LOC_Os10g17454
Os.52390.1.S1_at--434--6051Chr10:8462503..8462527 (25 bp)
GAGATTCTCAATACACCGAGTTGTA
LOC_Os10g17454
Os.52390.1.S1_at--120--5692Chr09:12840988..12841012 (25 bp)
GACATTGTCTGTTTGCTGTGAATCA
NONE
Os.52390.1.S1_at--419--2411Chr10:8462367..8462391 (25 bp)
AAAAATCACAACACTGCTCACCTCT
LOC_Os10g17454
Os.52390.1.S1_at--356--4831Chr10:8462352..8462376 (25 bp)
GCTCACCTCTGACATTATTGCAACT
LOC_Os10g17454
Os.52390.1.S1_at--346--4371Chr10:8462315..8462339 (25 bp)
GCCTTGTCAAGGTGATTGTCTCCGT
LOC_Os10g17454
Os.52390.1.S1_at--928--6591Chr10:8462302..8462326 (25 bp)
GATTGTCTCCGTATGGTAGATTGCC
LOC_Os10g17454
Os.52390.1.S1_at--462--6951Chr10:8462287..8462311 (25 bp)
GTAGATTGCCATTAATCCGTCCAAT
LOC_Os10g17454
Os.52390.1.S1_at--260--9771Chr10:8462275..8462299 (25 bp)
TAATCCGTCCAATTCTCAATTCCAT
LOC_Os10g17454
Os.52390.1.S1_at--104--2051Chr10:8462213..8462237 (25 bp)
ACTTTGCACTCTTCAATTGTTTTGC
LOC_Os10g17454
Os.52390.1.S1_at--313--4871Chr10:8462190..8462214 (25 bp)
GCTAGTAGCCTTTCTATCAACAAGA
LOC_Os10g17454
Target Sequence 
TGCACTAATGCTCATAGCCATCTCTTAAGAGATTCTCAATACACCGAGTTGTAAGTTTGCATAAATATGCTGATCTTTAA
GAAACATGAATGAATCACCGTTAATTAGGTACTGTAGCAAGCTGACATTGTCTGTTTGCTGTGAATCAGACGTTAAAAAA
CTTCAAAAATCACAACACTGCTCACCTCTGACATTATTGCAACTAAAATAAGAGGAGCCTTGTCAAGGTGATTGTCTCCG
TATGGTAGATTGCCATTAATCCGTCCAATTCTCAATTCCATTATACTCGTATCTGCATCAAGCCGAAGAGAACAATCAAC
TTTGCACTCTTCAATTGTTTTGCTAGTAGCCTTTCTATCAACAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52390.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis