Browse Element(s) Details


Os.9840.1.S1_at

Description gb:AK106038.1
DB_XREF= gi:32991247
TID=Os.9840.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9840 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative glucosyltransferase (OSJNBa0004A10.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-206-D10, full insert sequence.
FL= gb:AK106038.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1748911/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g17454Os.7927.2.S1_x_at11/1110+8455650..8465123RNA recognition motif family protein, expressed
LOC_Os10g17454Os.7927.1.S1_a_at11/1110+8455650..8465123RNA recognition motif family protein, expressed
LOC_Os10g17454Os.7927.1.S1_at11/1110+8455650..8465123RNA recognition motif family protein, expressed
LOC_Os10g17454Os.52390.1.S1_at11/1110+8455650..8465123RNA recognition motif family protein, expressed
LOC_Os10g17454OsAffx.30437.1.S1_x_at10/1110+8455650..8465123RNA recognition motif family protein, expressed
LOC_Os10g17454OsAffx.30437.1.S1_at3/1110+8455650..8465123RNA recognition motif family protein, expressed
LOC_Os10g17454Os.54271.1.S1_at1/1110+8455650..8465123RNA recognition motif family protein, expressed
LOC_Os10g17470OsAffx.20548.1.S1_at1/1110+8473882..8477208retrotransposon protein, putative, unclassified, expressed
LOC_Os10g17489Os.9840.1.S1_at11/1110+8483906..8496342UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os10g17489OsAffx.22947.2.S1_x_at8/1110+8483906..8496342UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os10g17489OsAffx.22947.1.S1_x_at7/1110+8483906..8496342UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os10g17489OsAffx.22947.3.S1_x_at4/1110+8483906..8496342UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os10g17489OsAffx.22947.5.S1_x_at3/1110+8483906..8496342UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os10g17510OsAffx.8301.1.S1_at10/1110+8501056..8505354hAT family dimerisation domain containing protein, expressed
LOC_Os10g17520Os.49465.1.S1_at11/1110+8505763..8506811expressed protein
LOC_Os10g17530OsAffx.275.1.S1_at11/1110+8510782..8511997retrotransposon protein, putative, unclassified
LOC_Os10g17540NANA10+8518096..8520279retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9840.1.S1_at--823--4271Chr10:8495768..8495792 (25 bp)
CCTGCAGTTGGGTGCTTTGTAACGC
LOC_Os10g17489
Os.9840.1.S1_at--253--1371Chr10:8495817..8495841 (25 bp)
AGAGCATTCGTAATGGAGTGCCCAT
LOC_Os10g17489
Os.9840.1.S1_at--906--7291Chr10:8495834..8495858 (25 bp)
GTGCCCATGCTATGTTGGCCATATT
LOC_Os10g17489
Os.9840.1.S1_at--584--8451Chr10:8495849..8495873 (25 bp)
TGGCCATATTTCACCGATCAGTTCA
LOC_Os10g17489
Os.9840.1.S1_at--702--211Chr10:8495888..8495912 (25 bp)
ATTTGTGATATTTGGCGGATTGGGC
LOC_Os10g17489
Os.9840.1.S1_at--1036--6091Chr10:8496059..8496083 (25 bp)
GAGTCCACCAGTAATTTGAACGCAG
LOC_Os10g17489
Os.9840.1.S1_at--812--10731Chr10:8496074..8496098 (25 bp)
TTGAACGCAGTTGTCGAGCTTATGA
LOC_Os10g17489
Os.9840.1.S1_at--692--4991Chr10:8496129..8496153 (25 bp)
GCAGGTTTTACGTTACTATTGATCC
LOC_Os10g17489
Os.9840.1.S1_at--790--8531Chr10:8496186..8496210 (25 bp)
TGGACCTGAAGTTTGCTTTGCAACC
LOC_Os10g17489
Os.9840.1.S1_at--747--6851Chr10:8496196..8496220 (25 bp)
GTTTGCTTTGCAACCTATGATTGTT
LOC_Os10g17489
Os.9840.1.S1_at--494--2991Chr10:8496231..8496255 (25 bp)
AATGTACGTGCTATATGCTCTAAAA
LOC_Os10g17489
Target Sequence 
CCTGCAGTTGGGTGCTTTGTAACGCATTGCGGGTGGAACTCAACGGTAGAGAGCATTCGTAATGGAGTGCCCATGCTATG
TTGGCCATATTTCACCGATCAGTTCACAAATCAAATATACATTTGTGATATTTGGCGGATTGGGCTAAAGATGGTGCAAA
CCTGTGGTGAGGGGATCGTGACCAAGGAGATAATGGTAGAGAGGTTGAAAGAGCTACTACTAGATGAGGGTATCAAGGAA
AGGGTGCAAAGGTTGAAGGAGTTTGCAGAAACAAACATGAGCGAAGAGGGTGAGTCCACCAGTAATTTGAACGCAGTTGT
CGAGCTTATGACAAGGCCAATGTCATAGAATATGGTTTAACGCAGGTTTTACGTTACTATTGATCCAATGAATAATGATA
TTTCATACTTCATTTTTATGGACCTGAAGTTTGCTTTGCAACCTATGATTGTTAAAACCATNTAATGTACGTGCTATATG
CTCTAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9840.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis