Browse Element(s) Details


Os.49465.1.S1_at

Description gb:AK109422.2
DB_XREF= gi:42821736
TID=Os.49465.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49465 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-305-E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-305-E11, full insert sequence.
FL= gb:AK109422.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1752011/11expressed protein
LOC_Os09g045001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g17489Os.9840.1.S1_at11/1110+8483906..8496342UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os10g17489OsAffx.22947.2.S1_x_at8/1110+8483906..8496342UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os10g17489OsAffx.22947.1.S1_x_at7/1110+8483906..8496342UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os10g17489OsAffx.22947.3.S1_x_at4/1110+8483906..8496342UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os10g17489OsAffx.22947.5.S1_x_at3/1110+8483906..8496342UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os10g17510OsAffx.8301.1.S1_at10/1110+8501056..8505354hAT family dimerisation domain containing protein, expressed
LOC_Os10g17520Os.49465.1.S1_at11/1110+8505763..8506811expressed protein
LOC_Os10g17530OsAffx.275.1.S1_at11/1110+8510782..8511997retrotransposon protein, putative, unclassified
LOC_Os10g17540NANA10+8518096..8520279retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g17560Os.27691.1.S1_x_at1/1110+8523289..8528995retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17570Os.45957.4.S1_x_at8/1110+8531688..8535374retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49465.1.S1_at--950--2592Chr09:2393952..2393976 (25 bp)
AACGCCGACATATCAAGGACTCCGC
LOC_Os09g04500
Os.49465.1.S1_at--1079--9271Chr10:8506105..8506129 (25 bp)
TCCGGAGTCCCTGTGATGACGGCAA
LOC_Os10g17520
Os.49465.1.S1_at--240--1893Chr11:13922679..13922703 (25 bp)
ACGTTGATTGCTTGGATGCGGCTCA
NONE
Os.49465.1.S1_at--817--9633Chr11:13922623..13922642 (20 bp)
TCAGGTTTTCTTTCTTTGTTGCTAA
NONE
Os.49465.1.S1_at--680--3674Chr09:2394111..2394135 (25 bp)
CTTTGTTGCTAATACTGGGTCCTTA
NONE
Os.49465.1.S1_at--615--8634Chr09:2394126..2394150 (25 bp)
TGGGTCCTTATTTCTTTCTTTGCTT
NONE
Os.49465.1.S1_at--125--10272Chr09:2394144..2394168 (25 bp)
TTTGCTTACTAACTTCTGGATCCCT
NONE
Os.49465.1.S1_at--871--7972Chr11:13922557..13922580 (24 bp)
GGATCCCTATATCTTCTGACTTTTT
NONE
Os.49465.1.S1_at--499--10391Chr10:8505922..8505946 (25 bp)
TTTTGCAGCAGTCGAGCCTTTGGGC
LOC_Os10g17520
Os.49465.1.S1_at--1128--9551Chr10:8505889..8505913 (25 bp)
TCTTCCCCATTTTTCTTTACTAGTG
LOC_Os10g17520
Os.49465.1.S1_at--261--1891Chr10:8505846..8505870 (25 bp)
ACGTCATCACGTCGATACCTATTGA
LOC_Os10g17520
Target Sequence 
AACGCCGACATATCAAGGACTCCGCCTCGCTGCCGTCAAGGTGGTGGAGGTGGTTGCCTCCGGAGTCCCTGTGATGACGG
CAACGCAGCTCGGCCACGTTGATTGCTTGGATGCGGCTCAGCAAATGCCTGGCGGGTAGCGATTGTTGCGCTCAGGTTTT
CTTTCTTTGTTGCTAATACTGGGTCCTTATTTCTTTCTTTGCTTACTAACTTCTGGATCCCTATATCTTCTGACTTTTTT
TTTTGCAGCAGTCGAGCCTTTGGGCTGCCTTCCTCTTCCCCATTTTTCTTTACTAGTGAGCGTGCACGTGCAAGGCACGT
CATCACGTCGATACCTATTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49465.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis