Browse Element(s) Details


OsAffx.8301.1.S1_at

Description tigr:9638.m01444
TID=OsAffx.8301.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hAT family dimerisation domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1751010/11hAT family dimerisation domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g17470OsAffx.20548.1.S1_at1/1110+8473882..8477208retrotransposon protein, putative, unclassified, expressed
LOC_Os10g17489Os.9840.1.S1_at11/1110+8483906..8496342UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os10g17489OsAffx.22947.2.S1_x_at8/1110+8483906..8496342UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os10g17489OsAffx.22947.1.S1_x_at7/1110+8483906..8496342UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os10g17489OsAffx.22947.3.S1_x_at4/1110+8483906..8496342UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os10g17489OsAffx.22947.5.S1_x_at3/1110+8483906..8496342UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os10g17510OsAffx.8301.1.S1_at10/1110+8501056..8505354hAT family dimerisation domain containing protein, expressed
LOC_Os10g17520Os.49465.1.S1_at11/1110+8505763..8506811expressed protein
LOC_Os10g17530OsAffx.275.1.S1_at11/1110+8510782..8511997retrotransposon protein, putative, unclassified
LOC_Os10g17540NANA10+8518096..8520279retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g17560Os.27691.1.S1_x_at1/1110+8523289..8528995retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8301.1.S1_at--933--7631Chr10:8502499..8502617 (25 bp)
GGGAGCACCTGTTGGTGAGCAACCA
LOC_Os10g17510
OsAffx.8301.1.S1_at--1087--2431Chr10:8502783..8502804 (22 bp)
AAAAGTGATCTAAGCCTCCAAGGAC
LOC_Os10g17510
OsAffx.8301.1.S1_at--239--5231Chr10:8502827..8502851 (25 bp)
GAATTTGAGCATATGCCCTTCCTCT
LOC_Os10g17510
OsAffx.8301.1.S1_at--488--10291NONE
TTTGCCCATTGGTTCTTATGCTTAT
NONE
OsAffx.8301.1.S1_at--349--3071Chr10:8504105..8504129 (25 bp)
AATCTATATTGTCAGCTCTCCACAT
LOC_Os10g17510
OsAffx.8301.1.S1_at--449--7111Chr10:8504115..8504139 (25 bp)
GTCAGCTCTCCACATGTTTCTGGAT
LOC_Os10g17510
OsAffx.8301.1.S1_at--187--10111Chr10:8505169..8505193 (25 bp)
TATGGTCTTTATGCACTGACTTCGG
LOC_Os10g17510
OsAffx.8301.1.S1_at--873--1951Chr10:8505183..8505207 (25 bp)
ACTGACTTCGGGTGTTCAGCGAGCA
LOC_Os10g17510
OsAffx.8301.1.S1_at--308--1091Chr10:8505207..8505231 (25 bp)
AGGGCGTTGCAGTCTTGCTGAGCTA
LOC_Os10g17510
OsAffx.8301.1.S1_at--418--5911Chr10:8505226..8505250 (25 bp)
GAGCTACCAGGTCTACTTCAGTATG
LOC_Os10g17510
OsAffx.8301.1.S1_at--594--932Chr10:8505251..8505275 (25 bp)
AGGAAGCAGTCAACCAACAACGTCG
LOC_Os10g17510
Target Sequence 
GGGAGCACCTGTTGGTGAGCAACCAGCCCCACTCCACCCAAAATCAACAAGGAAAAGGAAAGTTTCTGTCAAGGTTCTTT
TAGACAAAACTTCTAAAAAAAAAAGTGATCTAAGCCTCCAAGGACTATGGATAGATGTACTGGACCAGAATTTGAGCATA
TGCCCTTCCTCTATTTTGCCCATTGGTTCTTATGCTTATATAAATCTATATTGTCAGCTCTCCACATGTTTCTGGATCAC
TAACAAGAACCCAGGAAGATGTCCAATAGCATCTCAGAAAACTGACAAGATCTCACGAACTAACACGAGAAAATATGGTC
TTTATGCACTGACTTCGGGTGTTCAGCGAGCAGGGCGTTGCAGTCTTGCTGAGCTACCAGGTCTACTTCAGTATGAGGAA
GCAGTCAACCAACAACGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8301.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis