Browse Element(s) Details


OsAffx.26087.2.S1_at

Description tigr:9632.m02005
TID=OsAffx.26087.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2178011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g21730OsAffx.13910.1.S1_at10/114+12272443..12273748XH domain containing protein
LOC_Os04g21740OsAffx.15781.4.S1_x_at11/114+12275518..12278170hypothetical protein
LOC_Os04g21740OsAffx.15781.5.S1_x_at7/114+12275518..12278170hypothetical protein
LOC_Os04g21750OsAffx.30435.1.S1_at3/114+12281187..12287119retrotransposon protein, putative, unclassified
LOC_Os04g21750OsAffx.20553.1.S1_at3/114+12281187..12287119retrotransposon protein, putative, unclassified
LOC_Os04g21750OsAffx.22699.1.S1_x_at2/114+12281187..12287119retrotransposon protein, putative, unclassified
LOC_Os04g21750OsAffx.16111.1.S1_at1/114+12281187..12287119retrotransposon protein, putative, unclassified
LOC_Os04g21750OsAffx.19776.1.S1_at1/114+12281187..12287119retrotransposon protein, putative, unclassified
LOC_Os04g21750OsAffx.8201.1.S1_x_at1/114+12281187..12287119retrotransposon protein, putative, unclassified
LOC_Os04g21750OsAffx.199.1.S1_at1/114+12281187..12287119retrotransposon protein, putative, unclassified
LOC_Os04g21760OsAffx.3761.1.S1_x_at1/114+12287949..12290687hypothetical protein
LOC_Os04g21770NANA4+12293611..12294282retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g21780OsAffx.26087.2.S1_at11/114+12298339..12298798hypothetical protein
LOC_Os04g21790OsAffx.8678.1.S1_at11/114+12318721..12323927Protein kinase domain containing protein
LOC_Os04g21790Os.27099.1.S1_at4/114+12318721..12323927Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26087.2.S1_at--19--4171Chr04:12298458..12298606 (25 bp)
CGCCGAGCATGGTGTCGGAGCCCTC
LOC_Os04g21780
OsAffx.26087.2.S1_at--222--9431Chr04:12298599..12298620 (22 bp)
TCGGAGCCCTCGGAGACGGCCAGTG
LOC_Os04g21780
OsAffx.26087.2.S1_at--259--5991Chr04:12298608..12298632 (25 bp)
GAGACGGCCAGTGGGCGCCCGTGGA
LOC_Os04g21780
OsAffx.26087.2.S1_at--771--8391Chr04:12298621..12298645 (25 bp)
GGCGCCCGTGGATGGCGTCAACGGT
LOC_Os04g21780
OsAffx.26087.2.S1_at--822--4011Chr04:12298636..12298660 (25 bp)
CGTCAACGGTGTAGACGCGGTCGCT
LOC_Os04g21780
OsAffx.26087.2.S1_at--796--7211Chr04:12298670..12298694 (25 bp)
GTCGACGTCGTCTGGGAAGCACTCA
LOC_Os04g21780
OsAffx.26087.2.S1_at--145--1911Chr04:12298674..12298698 (25 bp)
ACGTCGTCTGGGAAGCACTCATCAT
LOC_Os04g21780
OsAffx.26087.2.S1_at--612--8191Chr04:12298684..12298708 (25 bp)
GGAAGCACTCATCATCGCAGAAGTC
LOC_Os04g21780
OsAffx.26087.2.S1_at--973--1491Chr04:12298687..12298711 (25 bp)
AGCACTCATCATCGCAGAAGTCGAG
LOC_Os04g21780
OsAffx.26087.2.S1_at--1052--3551Chr04:12298693..12298717 (25 bp)
CATCATCGCAGAAGTCGAGGCTGCT
LOC_Os04g21780
OsAffx.26087.2.S1_at--521--4091Chr04:12298720..12298744 (25 bp)
CGACGCAGAGAGATGGCGTCAACGT
LOC_Os04g21780
Target Sequence 
CGCCGAGCATGGTGTCGGAGCCCTCGGAGACGGCCAGTGGGCGCCCGTGGATGGCGTCAACGGTGTAGACGCGGTCGCTG
GCGCCGCAGTCGACGTCGTCTGGGAAGCACTCATCATCGCAGAAGTCGAGGCTGCTGGCGACGCAGAGAGATGGCGTCAA
CGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26087.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis