Browse Element(s) Details


OsAffx.8678.1.S1_at

Description gb:XM_354291.1
DB_XREF= gi:35190015
TID=OsAffx.8678.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2179011/11Protein kinase domain containing protein
LOC_Os12g115108/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g21770NANA4+12293611..12294282retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g21780OsAffx.26087.2.S1_at11/114+12298339..12298798hypothetical protein
LOC_Os04g21790OsAffx.8678.1.S1_at11/114+12318721..12323927Protein kinase domain containing protein
LOC_Os04g21790Os.27099.1.S1_at4/114+12318721..12323927Protein kinase domain containing protein
LOC_Os04g21800OsAffx.6468.1.S1_at8/114+12326068..12327692retrotransposon protein, putative, LINE subclass
LOC_Os04g21800OsAffx.6468.1.S1_x_at4/114+12326068..12327692retrotransposon protein, putative, LINE subclass
LOC_Os04g21810NANA4+12334394..12334996transposon protein, putative, unclassified
LOC_Os04g21820Os.27099.1.S1_at11/114+12339714..12344921Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8678.1.S1_at--343--12724Chr11:3719482..3719552 (25 bp)
AGATAACCCATCTCTGACCGATGAG
NONE
OsAffx.8678.1.S1_at--614--26124Chr11:3719486..3719556 (25 bp)
AACCCATCTCTGACCGATGAGTCAT
NONE
OsAffx.8678.1.S1_at--1141--35322Chr11:3719490..3719560 (25 bp)
CATCTCTGACCGATGAGTCATCAGT
NONE
OsAffx.8678.1.S1_at--198--58326Chr12:7802298..7802318 (21 bp)
GACCGATGAGTCATCAGTGACGTGT
NONE
OsAffx.8678.1.S1_at--924--3926Chr12:26204767..26204791 (25 bp)
ATCAGTGACGTGTCGTAACTACCTG
NONE
OsAffx.8678.1.S1_at--476--89321Chr12:26204772..26204796 (25 bp)
TGACGTGTCGTAACTACCTGACCGT
NONE
OsAffx.8678.1.S1_at--288--70521Chr12:26204781..26204847 (25 bp)
GTAACTACCTGACCGTCACTGATGA
NONE
OsAffx.8678.1.S1_at--582--89324Chr11:3719578..3719602 (25 bp)
TGACCGTCACTGATGACTCATCTCT
NONE
OsAffx.8678.1.S1_at--94--88526Chr12:7268348..7268369 (22 bp)
TGATGACTCATCTCTGACGGGTTGT
NONE
OsAffx.8678.1.S1_at--619--57128Chr12:26204804..26204828 (25 bp)
GACTCATCTCTGACGGGTTGTAACT
NONE
OsAffx.8678.1.S1_at--889--94731Chr12:26204810..26204834 (25 bp)
TCTCTGACGGGTTGTAACTTACGAC
NONE
Target Sequence 
AGATAACCCATCTCTGACCGATGAGTCATCAGTGACGTGTCGTAACTACCTGACCGTCACTGATGACTCATCTCTGACGG
GTTGTAACTTACGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8678.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis