Browse Element(s) Details


OsAffx.6468.1.S1_x_at

Description tigr:9637.m02829
TID=OsAffx.6468.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=KH domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g323104/11expressed protein
LOC_Os09g112204/11retrotransposon protein, putative, unclassified, expressed
LOC_Os04g218004/11retrotransposon protein, putative, LINE subclass
LOC_Os06g222601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32270Os.9485.1.S1_at11/119+19263096..19267132ribosomal protein S16 containing protein, expressed
LOC_Os09g32270Os.12229.1.S1_at11/119+19263096..19267132ribosomal protein S16 containing protein, expressed
LOC_Os09g32270OsAffx.30114.1.S1_s_at10/119+19263096..19267132ribosomal protein S16 containing protein, expressed
LOC_Os09g32280NANA9+19268294..19270022Pathogenesis-related protein 5 precursor, putative, expressed
LOC_Os09g32290Os.5601.1.S1_at11/119+19271921..19272860Sarcosine oxidase, putative, expressed
LOC_Os09g32290OsAffx.23323.1.S1_x_at1/119+19271921..19272860Sarcosine oxidase, putative, expressed
LOC_Os09g32300Os.15552.2.S1_x_at10/119+19279445..19285633KH domain containing protein, expressed
LOC_Os09g32310Os.53700.1.S1_at9/119+19286465..19289476expressed protein
LOC_Os09g32310OsAffx.6468.1.S1_x_at4/119+19286465..19289476expressed protein
LOC_Os09g32320Os.9801.1.S1_at11/119+19292346..19295663expressed protein
LOC_Os09g32330Os.8570.4.S1_at11/119+19302495..19304588expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6468.1.S1_x_at--541--9531Chr09:19288986..19289006 (21 bp)
TCTCAAGTTATGTCAGCATCCATGT
LOC_Os09g32310
OsAffx.6468.1.S1_x_at--956--2391Chr09:19289076..19289100 (25 bp)
AAACATCGCCACTTGAATCTATTAG
LOC_Os09g32310
OsAffx.6468.1.S1_x_at--104--5371Chr09:19289174..19289198 (25 bp)
GAAGAGAATCCGCTTGCTCGATCAA
LOC_Os09g32310
OsAffx.6468.1.S1_x_at--40--9111Chr09:19289188..19289212 (25 bp)
TGCTCGATCAAGTTCCATGTGACAA
LOC_Os09g32310
OsAffx.6468.1.S1_x_at--445--5191NONE
GCAATGCCATGAATGTTCCAAGGAG
NONE
OsAffx.6468.1.S1_x_at--225--733Chr09:19291037..19291059 (23 bp)
ATGTTCCAAGGAGGACTTTCATTTG
NONE
OsAffx.6468.1.S1_x_at--1084--8091Chr09:19291047..19291071 (25 bp)
GGACTTTCATTTGGAACCTTAGAAT
NONE
OsAffx.6468.1.S1_x_at--753--2813Chr09:19291085..19291109 (25 bp)
AAGATTTTCCTGTGGTACTTATGGA
NONE
OsAffx.6468.1.S1_x_at--656--6133Chr09:19291110..19291134 (25 bp)
GAGGGATTACTCTAACCAAAGACAA
NONE
OsAffx.6468.1.S1_x_at--569--2191Chr09:19291198..19291222 (25 bp)
ACAACACCTCTTTGTTTATTGTCAT
NONE
OsAffx.6468.1.S1_x_at--201--34Chr09:19291452..19291476 (25 bp)
ATTGGGCACAACAGTGGTCTTTGTT
NONE
Target Sequence 
TCTCAAGTTATGTCAGCATCCATGTGAAAGGAACAGATGCGAGGACAGCGCTGAGAAGGTCAATTTGTTATGGGATCAGA
TGTCATCTGATTTCAAACATCGCCACTTGAATCTATTAGAGATTACAGGATTTGCGATGGATGATAAGATGATAAATTAT
ACCAGGCTTATTATGGAGCGAGCTGTGAACTTGAAGAGAATCCGCTTGCTCGATCAAGTTCCATGTGACAAGGGCAATGC
CATGAATGTTCCAAGGAGGACTTTCATTTGGAACCTTAGAATTCCTTTGAAAATTAAGATTTTCCTGTGGTACTTATGGA
GAGGGATTACTCTAACCAAAGACAATCTTGCAAAAAGGAAGTGGAAGGGTAGCATTAAATATTGCTTTTGTAATTCTAAT
GAAACAATACAACACCTCTTTGTTTATTGTCATTTGGTGATCTTCAAGGGGACTTATTGGGCACAACAGTGGTCTTTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6468.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis