Browse Element(s) Details


Os.9801.1.S1_at

Description gb:AK070571.1
DB_XREF= gi:32980595
TID=Os.9801.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9801 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023058K10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023058K10, full insert sequence.
FL= gb:AK070571.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3232011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32280NANA9+19268294..19270022Pathogenesis-related protein 5 precursor, putative, expressed
LOC_Os09g32290Os.5601.1.S1_at11/119+19271921..19272860Sarcosine oxidase, putative, expressed
LOC_Os09g32290OsAffx.23323.1.S1_x_at1/119+19271921..19272860Sarcosine oxidase, putative, expressed
LOC_Os09g32300Os.15552.2.S1_x_at10/119+19279445..19285633KH domain containing protein, expressed
LOC_Os09g32310Os.53700.1.S1_at9/119+19286465..19289476expressed protein
LOC_Os09g32310OsAffx.6468.1.S1_x_at4/119+19286465..19289476expressed protein
LOC_Os09g32320Os.9801.1.S1_at11/119+19292346..19295663expressed protein
LOC_Os09g32330Os.8570.4.S1_at11/119+19302495..19304588expressed protein
LOC_Os09g32340OsAffx.17983.1.S1_at11/119+19319574..19319945hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9801.1.S1_at--193--9771Chr09:19292942..19292966 (25 bp)
TAATGCCGGCCGCTAACAAAGGCGA
LOC_Os09g32320
Os.9801.1.S1_at--703--7671Chr09:19292903..19292927 (25 bp)
GGGATTCATACCTTGCAAGAGCACT
LOC_Os09g32320
Os.9801.1.S1_at--1156--5831Chr09:19292877..19292901 (25 bp)
GACCTCAAAATCTGCTCGGAGAGCG
LOC_Os09g32320
Os.9801.1.S1_at--1153--8691Chr09:19292812..19292836 (25 bp)
TGTCGCCGGTAAGAGGATCGCTGCA
LOC_Os09g32320
Os.9801.1.S1_at--126--2411Chr09:19292779..19292803 (25 bp)
AAACATCATAGTTCCTGCTCCAGTG
LOC_Os09g32320
Os.9801.1.S1_at--390--1111Chr09:19292758..19292782 (25 bp)
AGTGTCCAGCAGTTCAGCTCTGGCT
LOC_Os09g32320
Os.9801.1.S1_at--760--8491Chr09:19292738..19292762 (25 bp)
TGGCTTCAGAGTTCGTCTCCACATA
LOC_Os09g32320
Os.9801.1.S1_at--660--431Chr09:19292696..19292720 (25 bp)
ATCTTGCCTACTCATGTTACTGCTA
LOC_Os09g32320
Os.9801.1.S1_at--908--10691Chr09:19292613..19292637 (25 bp)
TTGCTTGGCCAAGCTTTGGGTACAT
LOC_Os09g32320
Os.9801.1.S1_at--1010--7451Chr09:19292436..19292460 (25 bp)
GTGTGCTTCATGTACTACCAAGTTA
LOC_Os09g32320
Os.9801.1.S1_at--212--10471Chr09:19292393..19292417 (25 bp)
TTACTCCAAAATACTGCTTCCATAG
LOC_Os09g32320
Target Sequence 
TAATGCCGGCCGCTAACAAAGGCGAGTTCCTGAAATCCGGGGATTCATACCTTGCAAGAGCACTNGACCTCAAAATCTGC
TCGGAGAGCGACGTGTTCGTCCCTGCCATCCCCGGCCTGTTCTACGGACATGTCGCCGGTAAGAGGATCGCTGCAGGCCT
GACAAACATCATAGTTCCTGCTCCAGTGTCCAGCAGTTCAGCTCTGGCTTCAGAGTTCGTCTCCACATACGTGTCCAAGA
AGAGCCATCTTGCCTACTCATGTTACTGCTAGTACTGTTCTTATATCATCAGCATCAGCATCAGCATCAATAAGTTCAAC
TGAAGTGAGTTGCTTGGCCAAGCTTTGGGTACATATGTAAGTCCTTTTGTTGTATACTAGTTCATGATGTTGTGAGGAAC
AGTATCNTTTATGTGTTACTTAANTGTTGTTGATAACAAAAGGAGAGAAGCACAGAATTAGTGTGCTGAAAAAAAAAGGA
CACTAGATTAGGCATGTGGAAAGAGTGTGTGCTTCATGTACTACCAAGTTATGGTTCATCAGCTGGAAATTACTCCAAAA
TACTGCTTCCATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9801.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis