Browse Element(s) Details


Os.53700.1.S1_at

Description gb:AK074021.1
DB_XREF= gi:32984044
TID=Os.53700.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53700 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033073M10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033073M10, full insert sequence.
FL= gb:AK074021.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g323109/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32270Os.9485.1.S1_at11/119+19263096..19267132ribosomal protein S16 containing protein, expressed
LOC_Os09g32270Os.12229.1.S1_at11/119+19263096..19267132ribosomal protein S16 containing protein, expressed
LOC_Os09g32270OsAffx.30114.1.S1_s_at10/119+19263096..19267132ribosomal protein S16 containing protein, expressed
LOC_Os09g32280NANA9+19268294..19270022Pathogenesis-related protein 5 precursor, putative, expressed
LOC_Os09g32290Os.5601.1.S1_at11/119+19271921..19272860Sarcosine oxidase, putative, expressed
LOC_Os09g32290OsAffx.23323.1.S1_x_at1/119+19271921..19272860Sarcosine oxidase, putative, expressed
LOC_Os09g32300Os.15552.2.S1_x_at10/119+19279445..19285633KH domain containing protein, expressed
LOC_Os09g32310Os.53700.1.S1_at9/119+19286465..19289476expressed protein
LOC_Os09g32310OsAffx.6468.1.S1_x_at4/119+19286465..19289476expressed protein
LOC_Os09g32320Os.9801.1.S1_at11/119+19292346..19295663expressed protein
LOC_Os09g32330Os.8570.4.S1_at11/119+19302495..19304588expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53700.1.S1_at--380--5291Chr09:19289225..19289249 (25 bp)
GAATGGTATGGGATCTACATCCTCA
LOC_Os09g32310
Os.53700.1.S1_at--1099--7651Chr09:19289234..19289258 (25 bp)
GGGATCTACATCCTCAAACAAATGG
LOC_Os09g32310
Os.53700.1.S1_at--274--2931Chr09:19289254..19289278 (25 bp)
AATGGAGATTTCCTGTTGACCAAGG
LOC_Os09g32310
Os.53700.1.S1_at--1118--10411Chr09:19289305..19289329 (25 bp)
TTATAGATGGATTCTCCTCGTCTGC
LOC_Os09g32310
Os.53700.1.S1_at--1141--9491Chr09:19289317..19289341 (25 bp)
TCTCCTCGTCTGCTGAAATAACCAT
LOC_Os09g32310
Os.53700.1.S1_at--1050--7971Chr09:19289343..19289367 (25 bp)
GGATGAATCAGTTCTATTTATTCTA
LOC_Os09g32310
Os.53700.1.S1_at--100--1251Chr09:19289385..19289409 (25 bp)
AGTTGTATAATGGTCGTCGATTGTA
LOC_Os09g32310
Os.53700.1.S1_at--705--7211Chr09:19289400..19289424 (25 bp)
GTCGATTGTAAAAGTACGTAGCTAA
LOC_Os09g32310
Os.53700.1.S1_at--803--9811Chr09:19289425..19289449 (25 bp)
TAAAATTGTCATTTGGACCAAGAAG
LOC_Os09g32310
Os.53700.1.S1_at--1150--211Chr09:19289459..19289483 (25 bp)
ATATTCTGGGTAATCCTAGCCCTTT
NONE
Os.53700.1.S1_at--54--8631Chr09:19289465..19289488 (24 bp)
TGGGTAATCCTAGCCCTTTTCAGCC
NONE
Target Sequence 
GAATGGTATGGGATCTACATCCTCAAACAAATGGAGATTTCCTGTTGACCAAGGAGAAAAGAGTCTAATAAAGCAGAAGC
TTATAGATGGATTCTCCTCGTCTGCTGAAATAACCATAGGATGAATCAGTTCTATTTATTCTAGTCGATTGTAAATTATT
AGTTGTATAATGGTCGTCGATTGTAAAAGTACGTAGCTAATAAAATTGTCATTTGGACCAAGAAGTATCATGAAATATTC
TGGGTAATCCTAGCCCTTTTCAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53700.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis