Browse Element(s) Details


Os.5601.1.S1_at

Description gb:AK121017.1
DB_XREF= gi:37990640
TID=Os.5601.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5601 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023049A19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023049A19, full insert sequence.
FL= gb:AK121017.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3229011/11Sarcosine oxidase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32250Os.6203.1.S1_at11/119+19244513..19249906DNA repair ATPase, putative, expressed
LOC_Os09g32260Os.54203.1.S1_at10/119+19252877..19255544No apical meristem protein, expressed
LOC_Os09g32270Os.9485.1.S1_at11/119+19263096..19267132ribosomal protein S16 containing protein, expressed
LOC_Os09g32270Os.12229.1.S1_at11/119+19263096..19267132ribosomal protein S16 containing protein, expressed
LOC_Os09g32270OsAffx.30114.1.S1_s_at10/119+19263096..19267132ribosomal protein S16 containing protein, expressed
LOC_Os09g32280NANA9+19268294..19270022Pathogenesis-related protein 5 precursor, putative, expressed
LOC_Os09g32290Os.5601.1.S1_at11/119+19271921..19272860Sarcosine oxidase, putative, expressed
LOC_Os09g32290OsAffx.23323.1.S1_x_at1/119+19271921..19272860Sarcosine oxidase, putative, expressed
LOC_Os09g32300Os.15552.2.S1_x_at10/119+19279445..19285633KH domain containing protein, expressed
LOC_Os09g32310Os.53700.1.S1_at9/119+19286465..19289476expressed protein
LOC_Os09g32310OsAffx.6468.1.S1_x_at4/119+19286465..19289476expressed protein
LOC_Os09g32320Os.9801.1.S1_at11/119+19292346..19295663expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008115molecular_functionsarcosine oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5601.1.S1_at--805--9811Chr09:19272004..19272028 (25 bp)
TAACTTCTATGTGTGCTTTATACTC
LOC_Os09g32290
Os.5601.1.S1_at--952--3691Chr09:19271998..19272022 (25 bp)
CTATGTGTGCTTTATACTCTTGGAT
LOC_Os09g32290
Os.5601.1.S1_at--81--7471Chr09:19271994..19272018 (25 bp)
GTGTGCTTTATACTCTTGGATATTG
LOC_Os09g32290
Os.5601.1.S1_at--664--311Chr09:19271985..19272009 (25 bp)
ATACTCTTGGATATTGGTAGATTGT
LOC_Os09g32290
Os.5601.1.S1_at--630--7071Chr09:19271962..19271986 (25 bp)
GTAATAATTTGCATCTTCTCTGTCC
LOC_Os09g32290
Os.5601.1.S1_at--254--371Chr09:19271959..19271983 (25 bp)
ATAATTTGCATCTTCTCTGTCCTTG
LOC_Os09g32290
Os.5601.1.S1_at--412--211Chr09:19271956..19271980 (25 bp)
ATTTGCATCTTCTCTGTCCTTGTGT
LOC_Os09g32290
Os.5601.1.S1_at--542--4971Chr09:19271952..19271976 (25 bp)
GCATCTTCTCTGTCCTTGTGTATAA
LOC_Os09g32290
Os.5601.1.S1_at--994--431Chr09:19271950..19271974 (25 bp)
ATCTTCTCTGTCCTTGTGTATAAGA
LOC_Os09g32290
Os.5601.1.S1_at--650--3771Chr09:19271945..19271969 (25 bp)
CTCTGTCCTTGTGTATAAGATTCAA
LOC_Os09g32290
Os.5601.1.S1_at--1154--111Chr09:19271926..19271950 (25 bp)
ATTCAAAATAAAGTTGTTCTGTTGC
LOC_Os09g32290
Target Sequence 
TAACTTCTATGTGTGCTTTATACTCTTGGATATTGGTAGATTGTAATAATTTGCATCTTCTCTGTCCTTGTGTATAAGAT
TCAAAATAAAGTTGTTCTGTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5601.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis