Browse Element(s) Details


Os.6203.1.S1_at

Description gb:AK101485.1
DB_XREF= gi:32986694
TID=Os.6203.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6203 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033041K01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033041K01, full insert sequence.
FL= gb:AK101485.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3225011/11DNA repair ATPase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32210Os.13605.1.S1_at11/119+19220106..19227154Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os09g32220Os.12103.1.S1_at9/119+19234783..19238291Protein pob, putative, expressed
LOC_Os09g32230Os.53462.1.S1_at11/119+19238835..19240324Papain family cysteine protease containing protein, expressed
LOC_Os09g32240Os.8791.1.S1_at11/119+19240606..19244000lipid-binding serum glycoprotein family protein, putative, expressed
LOC_Os09g32240OsAffx.16011.1.S1_at1/119+19240606..19244000lipid-binding serum glycoprotein family protein, putative, expressed
LOC_Os09g32250Os.6203.1.S1_at11/119+19244513..19249906DNA repair ATPase, putative, expressed
LOC_Os09g32260Os.54203.1.S1_at10/119+19252877..19255544No apical meristem protein, expressed
LOC_Os09g32270Os.9485.1.S1_at11/119+19263096..19267132ribosomal protein S16 containing protein, expressed
LOC_Os09g32270Os.12229.1.S1_at11/119+19263096..19267132ribosomal protein S16 containing protein, expressed
LOC_Os09g32270OsAffx.30114.1.S1_s_at10/119+19263096..19267132ribosomal protein S16 containing protein, expressed
LOC_Os09g32280NANA9+19268294..19270022Pathogenesis-related protein 5 precursor, putative, expressed
LOC_Os09g32290Os.5601.1.S1_at11/119+19271921..19272860Sarcosine oxidase, putative, expressed
LOC_Os09g32290OsAffx.23323.1.S1_x_at1/119+19271921..19272860Sarcosine oxidase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6203.1.S1_at--591--6751Chr09:19249112..19249136 (25 bp)
GTTAATGCTAACCATGGCCATCGGA
LOC_Os09g32250
Os.6203.1.S1_at--883--1811Chr09:19249144..19249168 (25 bp)
ACGCCGGCATGCTGACAAATAGACC
LOC_Os09g32250
Os.6203.1.S1_at--419--8571Chr09:19249177..19249201 (25 bp)
TGGATTTTGGTCATGTCTGGTCTGC
LOC_Os09g32250
Os.6203.1.S1_at--411--9471Chr09:19249192..19249216 (25 bp)
TCTGGTCTGCCACATTGTAGTTGGA
LOC_Os09g32250
Os.6203.1.S1_at--881--4191Chr09:19249640..19249664 (25 bp)
CCCCATGTATGGACCTAGTTGTAAT
LOC_Os09g32250
Os.6203.1.S1_at--361--7071Chr09:19249660..19249684 (25 bp)
GTAATTGCGGTTCTGTAACTGTCGA
LOC_Os09g32250
Os.6203.1.S1_at--525--9151Chr09:19249687..19249711 (25 bp)
TGCCCTTCGCTGAGTAGGATTTAGT
LOC_Os09g32250
Os.6203.1.S1_at--797--6211Chr09:19249719..19249743 (25 bp)
GAGGCTGTATGTGCTTATTCATTTT
LOC_Os09g32250
Os.6203.1.S1_at--47--7831Chr09:19249747..19249771 (25 bp)
GGTCATGTCTTCTAGTTTTTGTTCA
LOC_Os09g32250
Os.6203.1.S1_at--597--8651Chr09:19249823..19249847 (25 bp)
TGGGCTCTCACTTACTGAAACTGTA
LOC_Os09g32250
Os.6203.1.S1_at--137--1211Chr09:19249847..19249871 (25 bp)
AGTATTGTACTTCTTCATGTTTAAC
LOC_Os09g32250
Target Sequence 
GTTAATGCTAACCATGGCCATCGGAAACACAAACGCCGGCATGCTGACAAATAGACCATATNTGTTGGATTTTGGTCATG
TCTGGTCTGCCACATTGTAGTTGGAGAAGATCTCGGATGGCATACAGAGTAGGATATCCCGGGCCATCGCTAAGCATTGG
TTTGTATTATTAACGAGTTACACTAGATCACACAAGAACTATGTATTTTTGCCCCCCATGTATGGACCTAGTTGTAATTG
CGGTTCTGTAACTGTCGATNTGCCCTTCGCTGAGTAGGATTTAGTGGACATGGAGGCTGTATGTGCTTATTCATTTTATT
GGTCATGTCTTCTAGTTTTTGTTCANNNNNNNNCNNNNNNGNNNNTNTGNGGNNGNNNANNCCCTGCCTCGTTTTNCTGG
GCTCTCACTTACTGAAACTGTAGTATTGTACTTCTTCATGTTTAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6203.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis