Browse Element(s) Details


Os.53462.1.S1_at

Description gb:AK072767.1
DB_XREF= gi:32982790
TID=Os.53462.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53462 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023120K15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023138P12, full insert sequence.
FL= gb:AK072767.1 gb:AK099197.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3223011/11Papain family cysteine protease containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32200Os.47929.1.S1_at11/119+19215466..19219305Mitochondrial carrier protein, expressed
LOC_Os09g32210Os.13605.1.S1_at11/119+19220106..19227154Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os09g32220Os.12103.1.S1_at9/119+19234783..19238291Protein pob, putative, expressed
LOC_Os09g32230Os.53462.1.S1_at11/119+19238835..19240324Papain family cysteine protease containing protein, expressed
LOC_Os09g32240Os.8791.1.S1_at11/119+19240606..19244000lipid-binding serum glycoprotein family protein, putative, expressed
LOC_Os09g32240OsAffx.16011.1.S1_at1/119+19240606..19244000lipid-binding serum glycoprotein family protein, putative, expressed
LOC_Os09g32250Os.6203.1.S1_at11/119+19244513..19249906DNA repair ATPase, putative, expressed
LOC_Os09g32260Os.54203.1.S1_at10/119+19252877..19255544No apical meristem protein, expressed
LOC_Os09g32270Os.9485.1.S1_at11/119+19263096..19267132ribosomal protein S16 containing protein, expressed
LOC_Os09g32270Os.12229.1.S1_at11/119+19263096..19267132ribosomal protein S16 containing protein, expressed
LOC_Os09g32270OsAffx.30114.1.S1_s_at10/119+19263096..19267132ribosomal protein S16 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0007568biological_processaging
GO:0009414biological_processresponse to water deprivation
GO:0009723biological_processresponse to ethylene stimulus
GO:0010150biological_processleaf senescence
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53462.1.S1_at--327--5971Chr09:19239155..19239179 (25 bp)
GAGAAGTACTGGATCGTGAAGAACT
LOC_Os09g32230
Os.53462.1.S1_at--1035--9871Chr09:19239101..19239125 (25 bp)
TACATCCTCATGCAGCGCGACGTCG
LOC_Os09g32230
Os.53462.1.S1_at--143--5911Chr09:19239036..19239060 (25 bp)
GAGCTACCCCGTCATGTGAGCCTCG
LOC_Os09g32230
Os.53462.1.S1_at--207--9631Chr09:19239025..19239049 (25 bp)
TCATGTGAGCCTCGTGGCCCGATCA
LOC_Os09g32230
Os.53462.1.S1_at--441--3991Chr09:19239013..19239037 (25 bp)
CGTGGCCCGATCACACGGTGCGTGT
LOC_Os09g32230
Os.53462.1.S1_at--129--7471Chr09:19238963..19238987 (25 bp)
GTGTGGCTTGAATTGGGATTGTTTA
LOC_Os09g32230
Os.53462.1.S1_at--1014--7911Chr09:19238948..19238972 (25 bp)
GGATTGTTTATAGTCTACTTAGTGA
LOC_Os09g32230
Os.53462.1.S1_at--250--331Chr09:19238900..19238924 (25 bp)
ATAAACGGAAAACCATTGTGTCACT
LOC_Os09g32230
Os.53462.1.S1_at--1095--4311Chr09:19238888..19238912 (25 bp)
CCATTGTGTCACTGTATAAAGTTAT
LOC_Os09g32230
Os.53462.1.S1_at--797--2751Chr09:19238862..19238886 (25 bp)
AAGAAAGCACGAACATCTCTGATAT
LOC_Os09g32230
Os.53462.1.S1_at--10--5491Chr09:19238852..19238876 (25 bp)
GAACATCTCTGATATACTGACAAAT
LOC_Os09g32230
Target Sequence 
GAGAAGTACTGGATCGTGAAGAACTCGTGGGGGGCGGAGNGGGGCGACGCCGGCTACATCCTCATGCAGCGCGACGTCGC
CGGCTTGGCGTCCGGGCTGTGCGGCATCGCGCTGCTGCCGAGCTACCCCGTCATGTGAGCCTCGTGGCCCGATCACACGG
TGCGTGTGAAGAATGAAGAATTTGTGTTGTGTGTGTGGCTTGAATTGGGATTGTTTATAGTCTACTTAGTGATGTAATTA
TGTATGTATGTATGTATAAACGGAAAACCATTGTGTCACTGTATAAAGTTATAAAGAAAGCACGAACATCTCTGATATAC
TGACAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53462.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis