Browse Element(s) Details


Os.54203.1.S1_at

Description gb:AK102511.1
DB_XREF= gi:32987720
TID=Os.54203.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54203 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033095I08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033095I08, full insert sequence.
FL= gb:AK102511.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3226010/11No apical meristem protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32220Os.12103.1.S1_at9/119+19234783..19238291Protein pob, putative, expressed
LOC_Os09g32230Os.53462.1.S1_at11/119+19238835..19240324Papain family cysteine protease containing protein, expressed
LOC_Os09g32240Os.8791.1.S1_at11/119+19240606..19244000lipid-binding serum glycoprotein family protein, putative, expressed
LOC_Os09g32240OsAffx.16011.1.S1_at1/119+19240606..19244000lipid-binding serum glycoprotein family protein, putative, expressed
LOC_Os09g32250Os.6203.1.S1_at11/119+19244513..19249906DNA repair ATPase, putative, expressed
LOC_Os09g32260Os.54203.1.S1_at10/119+19252877..19255544No apical meristem protein, expressed
LOC_Os09g32270Os.9485.1.S1_at11/119+19263096..19267132ribosomal protein S16 containing protein, expressed
LOC_Os09g32270Os.12229.1.S1_at11/119+19263096..19267132ribosomal protein S16 containing protein, expressed
LOC_Os09g32270OsAffx.30114.1.S1_s_at10/119+19263096..19267132ribosomal protein S16 containing protein, expressed
LOC_Os09g32280NANA9+19268294..19270022Pathogenesis-related protein 5 precursor, putative, expressed
LOC_Os09g32290Os.5601.1.S1_at11/119+19271921..19272860Sarcosine oxidase, putative, expressed
LOC_Os09g32290OsAffx.23323.1.S1_x_at1/119+19271921..19272860Sarcosine oxidase, putative, expressed
LOC_Os09g32300Os.15552.2.S1_x_at10/119+19279445..19285633KH domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54203.1.S1_at--270--9271Chr09:19253448..19253472 (25 bp)
TCCTCCCAGCTCTATTGCAACAAGA
LOC_Os09g32260
Os.54203.1.S1_at--854--2751Chr09:19253427..19253451 (25 bp)
AAGACCCATTTGGTCGTGGACACCA
LOC_Os09g32260
Os.54203.1.S1_at--411--8971Chr09:19253394..19253418 (25 bp)
TGAACCCCGTTGACATGGCGGAACT
LOC_Os09g32260
Os.54203.1.S1_at--339--5471Chr09:19253374..19253398 (25 bp)
GAACTCTCCCGGTTTGCTAGAGGTA
LOC_Os09g32260
Os.54203.1.S1_at--1136--3651Chr09:19253292..19253316 (25 bp)
CTTTTACACTATCAGGCCTTAACCT
LOC_Os09g32260
Os.54203.1.S1_at--908--551Chr09:19253212..19253236 (25 bp)
ATCCTCCAAGCGATGTCGATGCCGA
LOC_Os09g32260
Os.54203.1.S1_at--371--9991Chr09:19253127..19253151 (25 bp)
TAGCCAATGGTGTCATCCCACAGGG
LOC_Os09g32260
Os.54203.1.S1_at--27--6151Chr09:19253094..19253118 (25 bp)
GAGGTTTTACCACGGATGTTGTTGT
LOC_Os09g32260
Os.54203.1.S1_at--120--6651Chr09:19253074..19253098 (25 bp)
GTTGTTGGAGGCACTGGCATCAGAT
LOC_Os09g32260
Os.54203.1.S1_at--1017--6131Chr09:19253018..19253042 (25 bp)
GAGGTACTGGCCTGGTAGTTACCAA
LOC_Os09g32260
Os.54203.1.S1_at--73--1571Chr09:19252877..19252901 (25 bp)
AGCTAATGTTGTACCCTTGCTTTTT
NONE
Target Sequence 
TCCTCCCAGCTCTATTGCAACAAGACCCATTTGGTCGTGGACACCACCCTTACATGAACCCCGTTGACATGGCGGAACTC
TCCCGGTTTGCTAGAGGTACGCCGGGGTTGCACCCACACATCCAACCACACCCCGGTTACATCAACCCGGCTGCGCCTTT
TACACTATCAGGCCTTAACCTCAACCTTGGATCCTCGCCAGCCATGCCTCCACCACCACCACCGCCACCACAATCCATCC
TCCAAGCGATGTCGATGCCGATGAACCAACCAAGAAGTACTACAAACCAGGTTATGGTAACAGAGCAAATGATTCCAGGA
CTAGCCAATGGTGTCATCCCACAGGGAACAGATGGAGGTTTTACCACGGATGTTGTTGTTGGAGGCACTGGCATCAGATA
CCAGAATTTGGATGTAGAGCAGCTGGTGGAGAGGTACTGGCCTGGTAGTTACCAAATGTAGTCCTGAAGGAAATGCTTGG
GGTACTGCCAAGCAATTGTTGGTCTATTATGTAGGAAGACATAATTATTTGAGCTACCTTAATTTAGTCTATGGATATTG
TATGATTACTTAGCTAATGTTGTACCCTTGCTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54203.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis