Browse Element(s) Details


Os.8791.1.S1_at

Description gb:AK100566.1
DB_XREF= gi:32985775
TID=Os.8791.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8791 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023104K05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023104K05, full insert sequence.
FL= gb:AK100566.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3224011/11lipid-binding serum glycoprotein family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32200Os.47929.1.S1_at11/119+19215466..19219305Mitochondrial carrier protein, expressed
LOC_Os09g32210Os.13605.1.S1_at11/119+19220106..19227154Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os09g32220Os.12103.1.S1_at9/119+19234783..19238291Protein pob, putative, expressed
LOC_Os09g32230Os.53462.1.S1_at11/119+19238835..19240324Papain family cysteine protease containing protein, expressed
LOC_Os09g32240Os.8791.1.S1_at11/119+19240606..19244000lipid-binding serum glycoprotein family protein, putative, expressed
LOC_Os09g32240OsAffx.16011.1.S1_at1/119+19240606..19244000lipid-binding serum glycoprotein family protein, putative, expressed
LOC_Os09g32250Os.6203.1.S1_at11/119+19244513..19249906DNA repair ATPase, putative, expressed
LOC_Os09g32260Os.54203.1.S1_at10/119+19252877..19255544No apical meristem protein, expressed
LOC_Os09g32270Os.9485.1.S1_at11/119+19263096..19267132ribosomal protein S16 containing protein, expressed
LOC_Os09g32270Os.12229.1.S1_at11/119+19263096..19267132ribosomal protein S16 containing protein, expressed
LOC_Os09g32270OsAffx.30114.1.S1_s_at10/119+19263096..19267132ribosomal protein S16 containing protein, expressed
LOC_Os09g32280NANA9+19268294..19270022Pathogenesis-related protein 5 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8791.1.S1_at--903--7771Chr09:19241166..19241190 (25 bp)
GGTGCATTCTGCTGTTATTTCGTTA
LOC_Os09g32240
Os.8791.1.S1_at--1073--10191Chr09:19241064..19241088 (25 bp)
TATATTTCGCTTTCTGCTTGCAGTT
LOC_Os09g32240
Os.8791.1.S1_at--124--8811Chr09:19240992..19241016 (25 bp)
TGTTCGACAAGCTGTTCACCGACTT
LOC_Os09g32240
Os.8791.1.S1_at--1016--7651Chr09:19240947..19240971 (25 bp)
GGGATTACCATGATGCACTAGCGGG
LOC_Os09g32240
Os.8791.1.S1_at--163--7711Chr09:19240925..19240949 (25 bp)
GGGTGCCAAGTCTAGGTTTCAGCCA
LOC_Os09g32240
Os.8791.1.S1_at--433--6831Chr09:19240910..19240934 (25 bp)
GTTTCAGCCAGTACCATCTGCATGG
LOC_Os09g32240
Os.8791.1.S1_at--478--851Chr09:19240889..19240913 (25 bp)
ATGGCTTGGCCACTGACGAGCAGTT
LOC_Os09g32240
Os.8791.1.S1_at--646--8691Chr09:19240853..19240877 (25 bp)
TGTGCACTGCACATTGCCTTTTAGA
LOC_Os09g32240
Os.8791.1.S1_at--487--5311Chr09:19240791..19240815 (25 bp)
GAAGGATGGTACTTCCATTCCAATG
LOC_Os09g32240
Os.8791.1.S1_at--119--2171Chr09:19240726..19240750 (25 bp)
ACACCAAACTGTTGTCTGATCGAAA
LOC_Os09g32240
Os.8791.1.S1_at--581--5691Chr09:19240661..19240685 (25 bp)
GACTTCTCCATTTTCGGCTTATGAT
LOC_Os09g32240
Target Sequence 
GGTGCATTCTGCTGTTATTTCGTTACTAAATAAAAGTAAATAAAATGAATGTCATATTTGATATGCAACTGTGCAAAGTG
CAACAACTTGCTGAAAACTGTTATATTTCGCTTTCTGCTTGCAGTTTTTCCTTCCATTCCCATACTCCAGATCATATAAA
GTCTTGTGGAGGGTGTTCGACAAGCTGTTCACCGACTTCCGTGACTGCTTCAGCCGAGGGGATTACCATGATGCACTAGC
GGGTGCCAAGTCTAGGTTTCAGCCAGTACCATCTGCATGGCTTGGCCACTGACGAGCAGTTGCTGCTCTTGTTGTGCACT
GCACATTGCCTTTTAGATGTAGCAGCTATACTTTCTGAAATGCAAAACTGGACCGAAGGATGGTACTTCCATTCCAATGG
ATGATTTGTATATCTTTTAGTGTCTTAGCAACTTCAGAAACACCAAACTGTTGTCTGATCGAAAAATATATTCTCTTGTA
AATTCTAAACATTCAGAATTACCCGACTTCTCCATTTTCGGCTTATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8791.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis