Browse Element(s) Details


OsAffx.17983.1.S1_at

Description tigr:9637.m02832
TID=OsAffx.17983.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3234011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32320Os.9801.1.S1_at11/119+19292346..19295663expressed protein
LOC_Os09g32330Os.8570.4.S1_at11/119+19302495..19304588expressed protein
LOC_Os09g32340OsAffx.17983.1.S1_at11/119+19319574..19319945hypothetical protein
LOC_Os09g32350OsAffx.30115.1.S1_at9/119+19320884..19322717hypothetical protein
LOC_Os09g32360Os.53975.1.S1_at11/119+19329487..19331512expressed protein
LOC_Os09g32370OsAffx.30116.1.S1_at11/119+19332536..19334665expressed protein
LOC_Os09g32380Os.52462.1.S1_at11/119+19335293..19339062hAT family dimerisation domain containing protein, expressed
LOC_Os09g32390Os.35344.18.S1_x_at11/119+19341066..19347113transposon protein, putative, Mutator sub-class
LOC_Os09g32390Os.35344.3.S1_x_at9/119+19341066..19347113transposon protein, putative, Mutator sub-class
LOC_Os09g32390OsAffx.22940.5.S1_x_at3/119+19341066..19347113transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17983.1.S1_at--209--6031Chr09:19319879..19319903 (25 bp)
GAGATGATACAGTACAATAAAGCCA
LOC_Os09g32340
OsAffx.17983.1.S1_at--959--7031Chr09:19319868..19319892 (25 bp)
GTACAATAAAGCCATATGCTGTAAA
LOC_Os09g32340
OsAffx.17983.1.S1_at--385--4331Chr09:19319857..19319881 (25 bp)
CCATATGCTGTAAAGTTGAGGCTTG
LOC_Os09g32340
OsAffx.17983.1.S1_at--521--9831Chr09:19319745..19319871 (25 bp)
TAAAGTTGAGGCTTGGAAGCAGCAA
LOC_Os09g32340
OsAffx.17983.1.S1_at--252--10771Chr09:19319740..19319866 (25 bp)
TTGAGGCTTGGAAGCAGCAAGCAGC
LOC_Os09g32340
OsAffx.17983.1.S1_at--766--5291Chr09:19319673..19319697 (25 bp)
GAAGGAAACAAACAACAACAGGGAG
LOC_Os09g32340
OsAffx.17983.1.S1_at--938--10311Chr09:19319637..19319661 (25 bp)
TTTCTCTGCCATTCTAGTTCTGCAG
LOC_Os09g32340
OsAffx.17983.1.S1_at--625--3771Chr09:19319634..19319658 (25 bp)
CTCTGCCATTCTAGTTCTGCAGTTT
LOC_Os09g32340
OsAffx.17983.1.S1_at--825--9191Chr09:19319631..19319655 (25 bp)
TGCCATTCTAGTTCTGCAGTTTTTT
LOC_Os09g32340
OsAffx.17983.1.S1_at--399--10371Chr09:19319607..19319631 (25 bp)
TTTTTTCAGCTCAGGCCTGCACATT
LOC_Os09g32340
OsAffx.17983.1.S1_at--252--10371Chr09:19319606..19319630 (25 bp)
TTTTTCAGCTCAGGCCTGCACATTG
LOC_Os09g32340
Target Sequence 
GAGATGATACAGTACAATAAAGCCATATGCTGTAAAGTTGAGGCTTGGAAGCAGCAAGCAGCAGATGGGGTAGAAGAGGG
CAAAAGGAGGAAGCTAGAGAACAAGAAGGAAACAAACAACAACAGGGAGGGGAGGGGCCTTTTCTCTGCCATTCTAGTTC
TGCAGTTTTTTTTTTTCAGCTCAGGCCTGCACATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17983.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis