Browse Element(s) Details


Os.52462.1.S1_at

Description gb:AK067280.1
DB_XREF= gi:32977298
TID=Os.52462.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52462 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013103D22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013103D22, full insert sequence.
FL= gb:AK067280.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3238011/11hAT family dimerisation domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32340OsAffx.17983.1.S1_at11/119+19319574..19319945hypothetical protein
LOC_Os09g32350OsAffx.30115.1.S1_at9/119+19320884..19322717hypothetical protein
LOC_Os09g32360Os.53975.1.S1_at11/119+19329487..19331512expressed protein
LOC_Os09g32370OsAffx.30116.1.S1_at11/119+19332536..19334665expressed protein
LOC_Os09g32380Os.52462.1.S1_at11/119+19335293..19339062hAT family dimerisation domain containing protein, expressed
LOC_Os09g32390Os.35344.18.S1_x_at11/119+19341066..19347113transposon protein, putative, Mutator sub-class
LOC_Os09g32390Os.35344.3.S1_x_at9/119+19341066..19347113transposon protein, putative, Mutator sub-class
LOC_Os09g32390OsAffx.22940.5.S1_x_at3/119+19341066..19347113transposon protein, putative, Mutator sub-class
LOC_Os09g32400OsAffx.30117.1.S1_at11/119+19348393..19350967hypothetical protein
LOC_Os09g32400Os.27021.1.S1_x_at1/119+19348393..19350967hypothetical protein
LOC_Os09g32400Os.27021.1.S1_at1/119+19348393..19350967hypothetical protein
LOC_Os09g32410Os.49979.1.S1_at11/119+19351995..19356649F-box domain containing protein, expressed
LOC_Os09g32410OsAffx.30118.1.A1_at11/119+19351995..19356649F-box domain containing protein, expressed
LOC_Os09g32430Os.25019.1.S1_at10/119+19357507..19360582expressed protein
LOC_Os09g32440Os.5695.1.S1_at11/119+19363497..19368463Type II inositol-1,4,5-trisphosphate 5-phosphatase 12, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52462.1.S1_at--632--7811Chr09:19335858..19335882 (25 bp)
GGTCAGTGAAGAGCCTAGCCTTCTT
LOC_Os09g32380
Os.52462.1.S1_at--602--9991Chr09:19335843..19335867 (25 bp)
TAGCCTTCTTTGCAGAGATGACCTG
LOC_Os09g32380
Os.52462.1.S1_at--1080--5951Chr09:19335810..19335834 (25 bp)
GAGAATAGACGCACCATTTGCCGAG
LOC_Os09g32380
Os.52462.1.S1_at--219--211Chr09:19335795..19335819 (25 bp)
ATTTGCCGAGCCGACTTCTGAAGAC
LOC_Os09g32380
Os.52462.1.S1_at--199--6171Chr09:19335746..19335770 (25 bp)
GAGGAGGCTCCAACAGCGTCACTGT
LOC_Os09g32380
Os.52462.1.S1_at--62--2811Chr09:19335673..19335697 (25 bp)
AAGATCCCTATCAGTATGTCACCCA
LOC_Os09g32380
Os.52462.1.S1_at--1161--7991Chr09:19335645..19335669 (25 bp)
GGATGGAATTCTACCTTTCTGAAAC
LOC_Os09g32380
Os.52462.1.S1_at--348--5551Chr09:19335625..19335649 (25 bp)
GAAACCGGGAACTTCTGCTCTGTAG
LOC_Os09g32380
Os.52462.1.S1_at--800--6191Chr09:19335459..19335483 (25 bp)
GAGGCATGTGCAAAGCTTATTTTCC
LOC_Os09g32380
Os.52462.1.S1_at--771--3051Chr09:19335414..19335438 (25 bp)
CAATCCCCTCCTGTTGGTTTTGGAT
LOC_Os09g32380
Os.52462.1.S1_at--776--991Chr09:19335294..19335318 (25 bp)
AGGTTCTGAAACTTTCCCTGTGCAT
LOC_Os09g32380
Target Sequence 
GGTCAGTGAAGAGCCTAGCCTTCTTTGCAGAGATGACCTGAACTGGGAGAGAATAGACGCACCATTTGCCGAGCCGACTT
CTGAAGACGAAGAATTTGTCGCTATTGATGACGAGGAGGCTCCAACAGCGTCACTGTCCTGGCCGGCAGCAGCAGCAGAA
GACTCATATTGCCCACCACCTGATCAAGATCCCTATCAGTATGTCACCCAGGAGGATGGAATTCTACCTTTCTGAAACCG
GGAACTTCTGCTCTGTAGCGAACTGAAAACTGTCATTAGGACACACATCTAGCTAATGTCTTGGAAAACTTCCTGGGCAT
GGATTTGTATCGGTTTAACTGAATCTGTCCAGTTAGGAAATGAGAAGTTTCAATCTACTGCTGAAATCATTTACAGTCTG
AGGCATGTGCAAAGCTTATTTTCCATCCCCCCCCCCCACCCCCCAATCCCCTCCTGTTGGTTTTGGATGCTTCAGAGTTC
AGACTTAAGCTGTGATGCCAAAACCTGGAAGGCTGGAATTTCTGTTCCATAGTGAACTGAGCTGTCATTGGGACACATAT
ATTAGGTTCTGAAACTTTCCCTGTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52462.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis