Browse Element(s) Details


Os.49979.1.S1_at

Description gb:AK119477.1
DB_XREF= gi:37989100
TID=Os.49979.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49979 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-134-B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-134-B09, full insert sequence.
FL= gb:AK119477.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3241011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32360Os.53975.1.S1_at11/119+19329487..19331512expressed protein
LOC_Os09g32370OsAffx.30116.1.S1_at11/119+19332536..19334665expressed protein
LOC_Os09g32380Os.52462.1.S1_at11/119+19335293..19339062hAT family dimerisation domain containing protein, expressed
LOC_Os09g32390Os.35344.18.S1_x_at11/119+19341066..19347113transposon protein, putative, Mutator sub-class
LOC_Os09g32390Os.35344.3.S1_x_at9/119+19341066..19347113transposon protein, putative, Mutator sub-class
LOC_Os09g32390OsAffx.22940.5.S1_x_at3/119+19341066..19347113transposon protein, putative, Mutator sub-class
LOC_Os09g32400OsAffx.30117.1.S1_at11/119+19348393..19350967hypothetical protein
LOC_Os09g32400Os.27021.1.S1_x_at1/119+19348393..19350967hypothetical protein
LOC_Os09g32400Os.27021.1.S1_at1/119+19348393..19350967hypothetical protein
LOC_Os09g32410Os.49979.1.S1_at11/119+19351995..19356649F-box domain containing protein, expressed
LOC_Os09g32410OsAffx.30118.1.A1_at11/119+19351995..19356649F-box domain containing protein, expressed
LOC_Os09g32430Os.25019.1.S1_at10/119+19357507..19360582expressed protein
LOC_Os09g32440Os.5695.1.S1_at11/119+19363497..19368463Type II inositol-1,4,5-trisphosphate 5-phosphatase 12, putative, expressed
LOC_Os09g32450Os.52421.1.S1_at11/119+19368774..19382538DNA topoisomerase III beta-1, putative, expressed
LOC_Os09g32450OsAffx.17984.1.S1_at10/119+19368774..19382538DNA topoisomerase III beta-1, putative, expressed
LOC_Os09g32450Os.45957.4.S1_x_at1/119+19368774..19382538DNA topoisomerase III beta-1, putative, expressed
LOC_Os09g32450OsAffx.29179.1.S1_at1/119+19368774..19382538DNA topoisomerase III beta-1, putative, expressed
LOC_Os09g32450OsAffx.26538.1.S1_at1/119+19368774..19382538DNA topoisomerase III beta-1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49979.1.S1_at--811--151Chr09:19352885..19352909 (25 bp)
ATTTTGAAAGTCTTGATCCCGACAA
LOC_Os09g32410
Os.49979.1.S1_at--738--631Chr09:19352813..19352837 (25 bp)
ATGCTTCTCCTGTTTTGGATTCTTT
LOC_Os09g32410
Os.49979.1.S1_at--42--731Chr09:19352435..19352459 (25 bp)
ATGATTCAGTTTTTGGCGACGCCTC
LOC_Os09g32410
Os.49979.1.S1_at--123--8151Chr09:19352391..19352415 (25 bp)
GGACACAAGCACGAAAGCCTCAAGG
LOC_Os09g32410
Os.49979.1.S1_at--707--3051Chr09:19352359..19352383 (25 bp)
AATCATTGGATTTTGCTCTGCGACG
LOC_Os09g32410
Os.49979.1.S1_at--665--7611Chr09:19352205..19352229 (25 bp)
GGGAAAGTTCCATCCAAGGTTGAGT
LOC_Os09g32410
Os.49979.1.S1_at--530--5851Chr09:19352184..19352208 (25 bp)
GAGTTAACCGTTCTCGAGCTTTGCA
LOC_Os09g32410
Os.49979.1.S1_at--958--5911Chr09:19352169..19352193 (25 bp)
GAGCTTTGCATCTGGTGCCATGATC
LOC_Os09g32410
Os.49979.1.S1_at--830--5451Chr09:19352142..19352166 (25 bp)
GAACGTTTAGATGCCTTAGACAAAG
LOC_Os09g32410
Os.49979.1.S1_at--712--5511Chr09:19352117..19352141 (25 bp)
GAAAATTGATCACATTCCCCACTTC
LOC_Os09g32410
Os.49979.1.S1_at--788--71Chr09:19352104..19352128 (25 bp)
ATTCCCCACTTCTTGAGTTAGGCGA
LOC_Os09g32410
Target Sequence 
ATTTTGAAAGTCTTGATCCCGACAAGGCCTTTCCCCCATAATATGATTATTTGTCTTTGGTTTCTATTCTTGATGCTTCT
CCTGTTTTGGATTCTTTCATCTTTTGTGTACAACAGGGAGAAATGAAGCATGATTCAGTTTTTGGCGACGCCTCAAATTT
GAGGACGATGCCTGGACACAAGCACGAAAGCCTCAAGGATGTGGAAATCATTGGATTTTGCTCTGCGACGAGTATGGTTG
AGCTAACATGTTATTTACTCAAGAATGCGATATCACTGGAATATATTACATTGGCACTAAGAAGGGAGATGATCTTGGAA
GCCCATAGAGGGGTCATGGCAATCGAAAGATACATCAGGGGGAAAGTTCCATCCAAGGTTGAGTTAACCGTTCTCGAGCT
TTGCATCTGGTGCCATGATCTTGAACGTTTAGATGCCTTAGACAAAGGAAAATTGATCACATTCCCCACTTCTTGAGTTA
GGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49979.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis