Browse Element(s) Details


OsAffx.17984.1.S1_at

Description tigr:9637.m02843
TID=OsAffx.17984.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3245010/11DNA topoisomerase III beta-1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32390Os.35344.18.S1_x_at11/119+19341066..19347113transposon protein, putative, Mutator sub-class
LOC_Os09g32390Os.35344.3.S1_x_at9/119+19341066..19347113transposon protein, putative, Mutator sub-class
LOC_Os09g32390OsAffx.22940.5.S1_x_at3/119+19341066..19347113transposon protein, putative, Mutator sub-class
LOC_Os09g32400OsAffx.30117.1.S1_at11/119+19348393..19350967hypothetical protein
LOC_Os09g32400Os.27021.1.S1_x_at1/119+19348393..19350967hypothetical protein
LOC_Os09g32400Os.27021.1.S1_at1/119+19348393..19350967hypothetical protein
LOC_Os09g32410Os.49979.1.S1_at11/119+19351995..19356649F-box domain containing protein, expressed
LOC_Os09g32410OsAffx.30118.1.A1_at11/119+19351995..19356649F-box domain containing protein, expressed
LOC_Os09g32430Os.25019.1.S1_at10/119+19357507..19360582expressed protein
LOC_Os09g32440Os.5695.1.S1_at11/119+19363497..19368463Type II inositol-1,4,5-trisphosphate 5-phosphatase 12, putative, expressed
LOC_Os09g32450Os.52421.1.S1_at11/119+19368774..19382538DNA topoisomerase III beta-1, putative, expressed
LOC_Os09g32450OsAffx.17984.1.S1_at10/119+19368774..19382538DNA topoisomerase III beta-1, putative, expressed
LOC_Os09g32450Os.45957.4.S1_x_at1/119+19368774..19382538DNA topoisomerase III beta-1, putative, expressed
LOC_Os09g32450OsAffx.29179.1.S1_at1/119+19368774..19382538DNA topoisomerase III beta-1, putative, expressed
LOC_Os09g32450OsAffx.26538.1.S1_at1/119+19368774..19382538DNA topoisomerase III beta-1, putative, expressed
LOC_Os09g32470OsAffx.30119.1.S1_at11/119+19384217..19386594auxin-responsive family protein, putative, expressed
LOC_Os09g32480NANA9+19388981..19390264hypothetical protein
LOC_Os09g32490OsAffx.20169.1.S1_at8/119+19391557..19393658retrotransposon protein, putative, LINE subclass
LOC_Os09g32500Os.13485.1.S1_at10/119+19398515..1940062460S ribosomal protein L32, putative, expressed
LOC_Os09g32500Os.8861.1.S1_x_at4/119+19398515..1940062460S ribosomal protein L32, putative, expressed
LOC_Os09g32510Os.20775.1.S1_at11/119+19405796..19407978Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006265biological_processDNA topological change
GO:0006268biological_processDNA unwinding during replication
GO:0003677molecular_functionDNA binding
GO:0003916molecular_functionDNA topoisomerase activity
GO:0003917molecular_functionDNA topoisomerase type I activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17984.1.S1_at--1065--7851Chr09:19369302..19369326 (25 bp)
GGTTTGAGGCTTTTGGCTGGTCGTC
LOC_Os09g32450
OsAffx.17984.1.S1_at--248--8591Chr09:19369319..19369343 (25 bp)
TGGTCGTCGACATCATTGCGCGGTA
LOC_Os09g32450
OsAffx.17984.1.S1_at--982--3551Chr09:19369329..19369353 (25 bp)
CATCATTGCGCGGTAGGGTTAGTTC
LOC_Os09g32450
OsAffx.17984.1.S1_at--374--3591Chr09:19369332..19369356 (25 bp)
CATTGCGCGGTAGGGTTAGTTCCAG
LOC_Os09g32450
OsAffx.17984.1.S1_at--568--7591Chr09:19369364..19369388 (25 bp)
GGGAATTCAAAGATGGTAGACACTG
LOC_Os09g32450
OsAffx.17984.1.S1_at--419--5631Chr09:19369382..19369406 (25 bp)
GACACTGAGAGGATTAGATTCACTG
LOC_Os09g32450
OsAffx.17984.1.S1_at--24--6571Chr09:19369398..19369664 (25 bp)
GATTCACTGACATGACCGTGGGCAT
LOC_Os09g32450
OsAffx.17984.1.S1_at--749--8951Chr09:19369405..19369671 (25 bp)
TGACATGACCGTGGGCATCATTGCC
LOC_Os09g32450
OsAffx.17984.1.S1_at--757--3991Chr09:19369656..19369680 (25 bp)
CGTGGGCATCATTGCCACTGTAGGG
LOC_Os09g32450
OsAffx.17984.1.S1_at--889--271NONE
ATAGGATTGGGTGGACTGACATGAT
NONE
OsAffx.17984.1.S1_at--1121--7711Chr09:19369732..19370072 (25 bp)
GGGTGGACTGACATGATGTCTACAA
LOC_Os09g32450
Target Sequence 
GGTTTGAGGCTTTTGGCTGGTCGTCGACATCATTGCGCGGTAGGGTTAGTTCCAGGGACTTGGGGAATTCAAAGATGGTA
GACACTGAGAGGATTAGATTCACTGACATGACCGTGGGCATCATTGCCACTGTAGGGGTAGCTTCAGGGACTGGGAAAAT
TCAAGGATATTATAGAGCTGATAGGATTGGGTGGACTGACATGATGTCTACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17984.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis