Browse Element(s) Details


Os.13485.1.S1_at

Description gb:AK063752.1
DB_XREF= gi:32973770
TID=Os.13485.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.13485 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023130H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-121-A02, full insert sequence.
FL= gb:AK099282.1 gb:AK063752.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3250010/1160S ribosomal protein L32, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32450Os.52421.1.S1_at11/119+19368774..19382538DNA topoisomerase III beta-1, putative, expressed
LOC_Os09g32450OsAffx.17984.1.S1_at10/119+19368774..19382538DNA topoisomerase III beta-1, putative, expressed
LOC_Os09g32450Os.45957.4.S1_x_at1/119+19368774..19382538DNA topoisomerase III beta-1, putative, expressed
LOC_Os09g32450OsAffx.29179.1.S1_at1/119+19368774..19382538DNA topoisomerase III beta-1, putative, expressed
LOC_Os09g32450OsAffx.26538.1.S1_at1/119+19368774..19382538DNA topoisomerase III beta-1, putative, expressed
LOC_Os09g32470OsAffx.30119.1.S1_at11/119+19384217..19386594auxin-responsive family protein, putative, expressed
LOC_Os09g32480NANA9+19388981..19390264hypothetical protein
LOC_Os09g32490OsAffx.20169.1.S1_at8/119+19391557..19393658retrotransposon protein, putative, LINE subclass
LOC_Os09g32500Os.13485.1.S1_at10/119+19398515..1940062460S ribosomal protein L32, putative, expressed
LOC_Os09g32500Os.8861.1.S1_x_at4/119+19398515..1940062460S ribosomal protein L32, putative, expressed
LOC_Os09g32510Os.20775.1.S1_at11/119+19405796..19407978Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os09g32520OsAffx.30120.3.S1_s_at11/119+19412770..1941437260S ribosomal protein L32, putative, expressed
LOC_Os09g32520Os.8861.1.S1_x_at7/119+19412770..1941437260S ribosomal protein L32, putative, expressed
LOC_Os09g32526Os.11022.1.S1_at11/119+19414995..19417619FK506-binding protein 2-1 precursor, putative, expressed
LOC_Os09g32526OsAffx.30120.2.S1_s_at10/119+19414995..19417619FK506-binding protein 2-1 precursor, putative, expressed
LOC_Os09g32526Os.11022.1.S1_x_at10/119+19414995..19417619FK506-binding protein 2-1 precursor, putative, expressed
LOC_Os09g32532Os.46760.1.S1_at10/119+19418500..1942065860S ribosomal protein L32, putative, expressed
LOC_Os09g32532Os.8861.1.S1_x_at2/119+19418500..1942065860S ribosomal protein L32, putative, expressed
LOC_Os09g32532Os.9721.1.S1_at1/119+19418500..1942065860S ribosomal protein L32, putative, expressed
LOC_Os09g32540OsAffx.17985.1.S1_at11/119+19424552..19430435expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13485.1.S1_at--430--4411Chr09:19400315..19400339 (25 bp)
GCCAGGAGGACGAGTGAAATTTTCT
LOC_Os09g32500
Os.13485.1.S1_at--803--5591Chr09:19400330..19400354 (25 bp)
GAAATTTTCTGCAGTTTTTCGTGCT
LOC_Os09g32500
Os.13485.1.S1_at--1049--3431Chr09:19400341..19400365 (25 bp)
CAGTTTTTCGTGCTTATGGCTGCAT
LOC_Os09g32500
Os.13485.1.S1_at--239--9071Chr09:19400361..19400385 (25 bp)
TGCATTGTTCGTAGGGCAGTGCCTT
LOC_Os09g32500
Os.13485.1.S1_at--63--7591Chr09:19400374..19400398 (25 bp)
GGGCAGTGCCTTGGTACCTTAAAAT
LOC_Os09g32500
Os.13485.1.S1_at--529--9171Chr09:19400425..19400449 (25 bp)
TGCCCGTATGGACATCATTTTGCTG
LOC_Os09g32500
Os.13485.1.S1_at--535--3591Chr09:19400440..19400464 (25 bp)
CATTTTGCTGTGAGTGACCTGTCTA
LOC_Os09g32500
Os.13485.1.S1_at--1093--7371Chr09:19400453..19400477 (25 bp)
GTGACCTGTCTAGTTTTAGCAACAA
LOC_Os09g32500
Os.13485.1.S1_at--867--8911Chr09:19400531..19400555 (25 bp)
TGAGCGCTCCAAGTTTTCTAGATCC
LOC_Os09g32500
Os.13485.1.S1_at--881--3691Chr09:19400548..19400572 (25 bp)
CTAGATCCTGGAAACACTTGTTAGT
LOC_Os09g32500
Os.13485.1.S1_at--233--2271Chr09:19400601..19400625 (25 bp)
AAATCAATCCATTATTATAGCATCA
NONE
Target Sequence 
GCCAGGAGGACGAGTGAAATTTTCTGCAGTTTTTCGTGCTTATGGCTGCATTGTTCGTAGGGCAGTGCCTTGGTACCTTA
AAATTATCCATTTTGTGTTGCNTGTTAGATTTGCCCGTATGGACATCATTTTGCTGTGAGTGACCTGTCTAGTTTTAGCA
ACAATGAGATAAAAAGACTTTCAGCTTTTNNNNNNANNANAAANNNANNTGGTTTCTCTTGAGCGCTCCAAGTTTTCTAG
ATCCTGGAAACACTTGTTAGTTATTATTGNCCTCTATGAGAATACAACTAAATCAATCCATTATTATAGCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13485.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis