Browse Element(s) Details


Os.52421.1.S1_at

Description gb:AK066999.1
DB_XREF= gi:32977017
TID=Os.52421.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52421 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013092P06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013092P06, full insert sequence.
FL= gb:AK066999.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3245011/11DNA topoisomerase III beta-1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32390Os.35344.18.S1_x_at11/119+19341066..19347113transposon protein, putative, Mutator sub-class
LOC_Os09g32390Os.35344.3.S1_x_at9/119+19341066..19347113transposon protein, putative, Mutator sub-class
LOC_Os09g32390OsAffx.22940.5.S1_x_at3/119+19341066..19347113transposon protein, putative, Mutator sub-class
LOC_Os09g32400OsAffx.30117.1.S1_at11/119+19348393..19350967hypothetical protein
LOC_Os09g32400Os.27021.1.S1_x_at1/119+19348393..19350967hypothetical protein
LOC_Os09g32400Os.27021.1.S1_at1/119+19348393..19350967hypothetical protein
LOC_Os09g32410Os.49979.1.S1_at11/119+19351995..19356649F-box domain containing protein, expressed
LOC_Os09g32410OsAffx.30118.1.A1_at11/119+19351995..19356649F-box domain containing protein, expressed
LOC_Os09g32430Os.25019.1.S1_at10/119+19357507..19360582expressed protein
LOC_Os09g32440Os.5695.1.S1_at11/119+19363497..19368463Type II inositol-1,4,5-trisphosphate 5-phosphatase 12, putative, expressed
LOC_Os09g32450Os.52421.1.S1_at11/119+19368774..19382538DNA topoisomerase III beta-1, putative, expressed
LOC_Os09g32450OsAffx.17984.1.S1_at10/119+19368774..19382538DNA topoisomerase III beta-1, putative, expressed
LOC_Os09g32450Os.45957.4.S1_x_at1/119+19368774..19382538DNA topoisomerase III beta-1, putative, expressed
LOC_Os09g32450OsAffx.29179.1.S1_at1/119+19368774..19382538DNA topoisomerase III beta-1, putative, expressed
LOC_Os09g32450OsAffx.26538.1.S1_at1/119+19368774..19382538DNA topoisomerase III beta-1, putative, expressed
LOC_Os09g32470OsAffx.30119.1.S1_at11/119+19384217..19386594auxin-responsive family protein, putative, expressed
LOC_Os09g32480NANA9+19388981..19390264hypothetical protein
LOC_Os09g32490OsAffx.20169.1.S1_at8/119+19391557..19393658retrotransposon protein, putative, LINE subclass
LOC_Os09g32500Os.13485.1.S1_at10/119+19398515..1940062460S ribosomal protein L32, putative, expressed
LOC_Os09g32500Os.8861.1.S1_x_at4/119+19398515..1940062460S ribosomal protein L32, putative, expressed
LOC_Os09g32510Os.20775.1.S1_at11/119+19405796..19407978Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006265biological_processDNA topological change
GO:0006268biological_processDNA unwinding during replication
GO:0003677molecular_functionDNA binding
GO:0003916molecular_functionDNA topoisomerase activity
GO:0003917molecular_functionDNA topoisomerase type I activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52421.1.S1_at--1124--7371Chr09:19381945..19381969 (25 bp)
GTGAGTCTACTATCATCGAAGTTGA
LOC_Os09g32450
Os.52421.1.S1_at--204--1611Chr09:19382038..19382062 (25 bp)
AGCTGTTGCATTCGCTCATTGAGAT
LOC_Os09g32450
Os.52421.1.S1_at--1085--7631Chr09:19382151..19382175 (25 bp)
GGGAGCTCAAGACACGATGATCCTA
LOC_Os09g32450
Os.52421.1.S1_at--470--5531Chr09:19382246..19382270 (25 bp)
GAAACTTAACCACCACTGTTGTTCT
LOC_Os09g32450
Os.52421.1.S1_at--572--6731Chr09:19382266..19382290 (25 bp)
GTTCTTTCCATTTTCTTCCTGTATA
LOC_Os09g32450
Os.52421.1.S1_at--1129--7871Chr09:19382316..19382340 (25 bp)
GGTTTTGCTACCATGCTAAGACTGT
LOC_Os09g32450
Os.52421.1.S1_at--570--5711Chr09:19382335..19382359 (25 bp)
GACTGTTATTTCTGTTTCTATTGGA
LOC_Os09g32450
Os.52421.1.S1_at--674--8971Chr09:19382360..19382384 (25 bp)
TGAAGTTAGGCTTGTTTCCCAGGTT
LOC_Os09g32450
Os.52421.1.S1_at--188--8351Chr09:19382392..19382416 (25 bp)
GGCTGTGTAGCATCGATCTTATGTA
LOC_Os09g32450
Os.52421.1.S1_at--682--5471Chr09:19382482..19382506 (25 bp)
GAACTTCTGGGTCGTAATGCGTTTA
LOC_Os09g32450
Os.52421.1.S1_at--4--4651Chr09:19382500..19382524 (25 bp)
GCGTTTACCAACGACACAACACGAG
LOC_Os09g32450
Target Sequence 
GTGAGTCTACTATCATCGAAGTTGATTTTAACAAGAAAACTACCCCACTTAAGGATGGAGCTACTTTGCATGAGGGTTGC
ATCTTGTGCGATGAGCTGTTGCATTCGCTCATTGAGATGAAGCATGGGAAGTCATTTTTTATGAGGAGAGGTAGAGGAAG
AGGCAGGGGTAGAGGTCGAGGGAGAGGAAGCAGTAGGGGAAGACGGGGGAGCTCAAGACACGATGATCCTAAGATGAGCT
TCAGAGATTTCTGAAAGTTTCAGGGCTTAAACCTATATGTAAGTACATGCAACACTAGTTAGAAACTTAACCACCACTGT
TGTTCTTTCCATTTTCTTCCTGTATAAACCCTAGATCAAGTTATCTTTCATGGTTTTGCTACCATGCTAAGACTGTTATT
TCTGTTTCTATTGGATGAAGTTAGGCTTGTTTCCCAGGTTGAAGAATGGCTGTGTAGCATCGATCTTATGTAAACAGTGG
TTGGTAAATGGTAACAGGGCCAACGGTTGCAAGGGTTGGTGAGATACTGACAATTGAGAACTTCTGGGTCGTAATGCGTT
TACCAACGACACAACACGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52421.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis