Browse Element(s) Details


Os.5695.1.S1_at

Description gb:AK100152.1
DB_XREF= gi:32985361
TID=Os.5695.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5695 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023015M11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023015M11, full insert sequence.
FL= gb:AK100152.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3244011/11Type II inositol-1,4,5-trisphosphate 5-phosphatase 12, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32380Os.52462.1.S1_at11/119+19335293..19339062hAT family dimerisation domain containing protein, expressed
LOC_Os09g32390Os.35344.18.S1_x_at11/119+19341066..19347113transposon protein, putative, Mutator sub-class
LOC_Os09g32390Os.35344.3.S1_x_at9/119+19341066..19347113transposon protein, putative, Mutator sub-class
LOC_Os09g32390OsAffx.22940.5.S1_x_at3/119+19341066..19347113transposon protein, putative, Mutator sub-class
LOC_Os09g32400OsAffx.30117.1.S1_at11/119+19348393..19350967hypothetical protein
LOC_Os09g32400Os.27021.1.S1_x_at1/119+19348393..19350967hypothetical protein
LOC_Os09g32400Os.27021.1.S1_at1/119+19348393..19350967hypothetical protein
LOC_Os09g32410Os.49979.1.S1_at11/119+19351995..19356649F-box domain containing protein, expressed
LOC_Os09g32410OsAffx.30118.1.A1_at11/119+19351995..19356649F-box domain containing protein, expressed
LOC_Os09g32430Os.25019.1.S1_at10/119+19357507..19360582expressed protein
LOC_Os09g32440Os.5695.1.S1_at11/119+19363497..19368463Type II inositol-1,4,5-trisphosphate 5-phosphatase 12, putative, expressed
LOC_Os09g32450Os.52421.1.S1_at11/119+19368774..19382538DNA topoisomerase III beta-1, putative, expressed
LOC_Os09g32450OsAffx.17984.1.S1_at10/119+19368774..19382538DNA topoisomerase III beta-1, putative, expressed
LOC_Os09g32450Os.45957.4.S1_x_at1/119+19368774..19382538DNA topoisomerase III beta-1, putative, expressed
LOC_Os09g32450OsAffx.29179.1.S1_at1/119+19368774..19382538DNA topoisomerase III beta-1, putative, expressed
LOC_Os09g32450OsAffx.26538.1.S1_at1/119+19368774..19382538DNA topoisomerase III beta-1, putative, expressed
LOC_Os09g32470OsAffx.30119.1.S1_at11/119+19384217..19386594auxin-responsive family protein, putative, expressed
LOC_Os09g32480NANA9+19388981..19390264hypothetical protein
LOC_Os09g32490OsAffx.20169.1.S1_at8/119+19391557..19393658retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
GO:0004437molecular_functioninositol or phosphatidylinositol phosphatase activity
GO:0004445molecular_functioninositol-polyphosphate 5-phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5695.1.S1_at--1002--9671Chr09:19367822..19367846 (25 bp)
TCACGGTAAACATCAGAGGCAGCAC
LOC_Os09g32440
Os.5695.1.S1_at--811--7511Chr09:19368008..19368032 (25 bp)
GGGAGTCGAACCACCACAAGCGGGA
LOC_Os09g32440
Os.5695.1.S1_at--527--8111Chr09:19368045..19368069 (25 bp)
GGACTACGCTCAGTTCGGGAGCTCG
LOC_Os09g32440
Os.5695.1.S1_at--102--3971Chr09:19368068..19368092 (25 bp)
CGGAGGTGCATGACCTGTGCCGCAT
LOC_Os09g32440
Os.5695.1.S1_at--484--9171Chr09:19368097..19368121 (25 bp)
TGCCCTTGATGAACTATAGACCTGT
LOC_Os09g32440
Os.5695.1.S1_at--527--2831Chr09:19368140..19368164 (25 bp)
AAGTTTTCGTAGGTGTGTTTCTGAT
LOC_Os09g32440
Os.5695.1.S1_at--460--8031Chr09:19368196..19368220 (25 bp)
GGAGTTTGCTCTAAAGTTCTGTACA
LOC_Os09g32440
Os.5695.1.S1_at--1105--7011Chr09:19368216..19368240 (25 bp)
GTACATATGCTTCACTTACCTCTAC
LOC_Os09g32440
Os.5695.1.S1_at--887--1711Chr09:19368239..19368263 (25 bp)
ACCAGCTGCTACTGCTTCTAATGTA
LOC_Os09g32440
Os.5695.1.S1_at--925--6091Chr09:19368283..19368307 (25 bp)
GAGTCATTGGCATACCACTGCTAAT
LOC_Os09g32440
Os.5695.1.S1_at--1059--3131Chr09:19368325..19368349 (25 bp)
AATTACATGCTGATTCTTAAGGGTG
LOC_Os09g32440
Target Sequence 
TCACGGTAAACATCAGAGGCAGCACCTCCACCGAGACCAAGNCGCACGCNATCAGCATCCGGCATCACTGCCCGGCGACG
TCGGCGCCGNCGCTGATCATCAGCAACCCGCTGTCATCGTCGGCCGCCCCGCCGATCAATGCCCTGGCCAGCGAAGGGCC
GCCGTNGAAGCGCTCCTCCAAGAAGAGGGAGTCGAACCACCACAAGCGGGAGNAGCAGCAGCAGGACTACGCTCAGTTCG
GGAGCTCGGAGGTGCATGACCTGTGCCGCATGCGCTGCCCTTGATGAACTATAGACCTGTAGAGAGATCAGAATTCAGAA
GTTTTCGTAGGTGTGTTTCTGATATATATATATATATATATATAACATCAGGGAGGAGTTTGCTCTAAAGTTCTGTACAT
ATGCTTCACTTACCTCTACCAGCTGCTACTGCTTCTAATGTAACCCAACAAAAGGAGTGTAGAGTCATTGGCATACCACT
GCTAATAATTTGTGTGTTTTTTTAATTACATGCTGATTCTTAAGGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5695.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis