Browse Element(s) Details


OsAffx.30119.1.S1_at

Description tigr:9637.m02845
TID=OsAffx.30119.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3247011/11auxin-responsive family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32430Os.25019.1.S1_at10/119+19357507..19360582expressed protein
LOC_Os09g32440Os.5695.1.S1_at11/119+19363497..19368463Type II inositol-1,4,5-trisphosphate 5-phosphatase 12, putative, expressed
LOC_Os09g32450Os.52421.1.S1_at11/119+19368774..19382538DNA topoisomerase III beta-1, putative, expressed
LOC_Os09g32450OsAffx.17984.1.S1_at10/119+19368774..19382538DNA topoisomerase III beta-1, putative, expressed
LOC_Os09g32450Os.45957.4.S1_x_at1/119+19368774..19382538DNA topoisomerase III beta-1, putative, expressed
LOC_Os09g32450OsAffx.29179.1.S1_at1/119+19368774..19382538DNA topoisomerase III beta-1, putative, expressed
LOC_Os09g32450OsAffx.26538.1.S1_at1/119+19368774..19382538DNA topoisomerase III beta-1, putative, expressed
LOC_Os09g32470OsAffx.30119.1.S1_at11/119+19384217..19386594auxin-responsive family protein, putative, expressed
LOC_Os09g32480NANA9+19388981..19390264hypothetical protein
LOC_Os09g32490OsAffx.20169.1.S1_at8/119+19391557..19393658retrotransposon protein, putative, LINE subclass
LOC_Os09g32500Os.13485.1.S1_at10/119+19398515..1940062460S ribosomal protein L32, putative, expressed
LOC_Os09g32500Os.8861.1.S1_x_at4/119+19398515..1940062460S ribosomal protein L32, putative, expressed
LOC_Os09g32510Os.20775.1.S1_at11/119+19405796..19407978Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30119.1.S1_at--838--5411Chr09:19385537..19385931 (25 bp)
GAAGCGCAACATCCATGGATTGCTC
LOC_Os09g32470
OsAffx.30119.1.S1_at--587--8371Chr09:19385477..19385501 (25 bp)
GGCGATCTTGGCGAGGTATCTCAAG
LOC_Os09g32470
OsAffx.30119.1.S1_at--363--9531Chr09:19385459..19385483 (25 bp)
TCTCAAGACCTTCAGATCGGCGGAC
LOC_Os09g32470
OsAffx.30119.1.S1_at--948--7891Chr09:19385427..19385451 (25 bp)
GGTTCTACCTCCATGTGAGCTGCCA
LOC_Os09g32470
OsAffx.30119.1.S1_at--889--771Chr09:19385344..19385368 (25 bp)
ATGTCCAATGGGATCACCTACACTC
LOC_Os09g32470
OsAffx.30119.1.S1_at--905--8271Chr09:19385305..19385329 (25 bp)
GGCATCATTGTCTTTGCTCTTGGCA
LOC_Os09g32470
OsAffx.30119.1.S1_at--1028--9571Chr09:19384845..19385312 (25 bp)
TCTTGGCACCCTGCAAATTTTTGCG
LOC_Os09g32470
OsAffx.30119.1.S1_at--552--3131Chr09:19384830..19384853 (24 bp)
AATTTTTGCGCTGTTCTTGAGGCCC
LOC_Os09g32470
OsAffx.30119.1.S1_at--235--7191Chr09:19384757..19384781 (25 bp)
GTCGGCTACACGGTGATCATACTGG
LOC_Os09g32470
OsAffx.30119.1.S1_at--319--411Chr09:19384634..19384658 (25 bp)
ATCATCCTTGAGGTCGTCACATGGG
LOC_Os09g32470
OsAffx.30119.1.S1_at--550--8391Chr09:19384594..19384618 (25 bp)
GGCGCAATGCCGAGAGCAAGACCTT
LOC_Os09g32470
Target Sequence 
GAAGCGCAACATCCATGGATTGCTCAACGCCGTGAGCTGGGGAATCCTGCTGCCCATGGGGGCGATCTTGGCGAGGTATC
TCAAGACCTTCAGATCGGCGGACCCGGCATGGTTCTACCTCCATGTGAGCTGCCAGCTGATCGGCTATGGCGTCGGCGTC
GCCGGCTGGGCCACCGGCATCAACCTCGGCAACATGTCCAATGGGATCACCTACACTCTCCACCGCAACATCGGCATCAT
TGTCTTTGCTCTTGGCACCCTGCAAATTTTTGCGCTGTTCTTGAGGCCCAAGAAGGAGAACAAGTACAGGGTCTACTGGA
ACATGTACCACCACTCCGTCGGCTACACGGTGATCATACTGGGGATCACCAACATCTTCAAGGGGATGACCATCCTTGGC
GTCGAGCAGCGGTGGAAGACGGCCTACGTCGCCGTCCTCTGCCTCCTCGGCGTCGCCGCCATCATCCTTGAGGTCGTCAC
ATGGGGCATGGTGGTGAAGAGGCGCAATGCCGAGAGCAAGACCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30119.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis