Browse Element(s) Details


Os.25019.1.S1_at

Description gb:AK071129.1
DB_XREF= gi:32981152
TID=Os.25019.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25019 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023077C23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023077C23, full insert sequence.
FL= gb:AK071129.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3243010/11expressed protein
LOC_Os05g461402/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32370OsAffx.30116.1.S1_at11/119+19332536..19334665expressed protein
LOC_Os09g32380Os.52462.1.S1_at11/119+19335293..19339062hAT family dimerisation domain containing protein, expressed
LOC_Os09g32390Os.35344.18.S1_x_at11/119+19341066..19347113transposon protein, putative, Mutator sub-class
LOC_Os09g32390Os.35344.3.S1_x_at9/119+19341066..19347113transposon protein, putative, Mutator sub-class
LOC_Os09g32390OsAffx.22940.5.S1_x_at3/119+19341066..19347113transposon protein, putative, Mutator sub-class
LOC_Os09g32400OsAffx.30117.1.S1_at11/119+19348393..19350967hypothetical protein
LOC_Os09g32400Os.27021.1.S1_x_at1/119+19348393..19350967hypothetical protein
LOC_Os09g32400Os.27021.1.S1_at1/119+19348393..19350967hypothetical protein
LOC_Os09g32410Os.49979.1.S1_at11/119+19351995..19356649F-box domain containing protein, expressed
LOC_Os09g32410OsAffx.30118.1.A1_at11/119+19351995..19356649F-box domain containing protein, expressed
LOC_Os09g32430Os.25019.1.S1_at10/119+19357507..19360582expressed protein
LOC_Os09g32440Os.5695.1.S1_at11/119+19363497..19368463Type II inositol-1,4,5-trisphosphate 5-phosphatase 12, putative, expressed
LOC_Os09g32450Os.52421.1.S1_at11/119+19368774..19382538DNA topoisomerase III beta-1, putative, expressed
LOC_Os09g32450OsAffx.17984.1.S1_at10/119+19368774..19382538DNA topoisomerase III beta-1, putative, expressed
LOC_Os09g32450Os.45957.4.S1_x_at1/119+19368774..19382538DNA topoisomerase III beta-1, putative, expressed
LOC_Os09g32450OsAffx.29179.1.S1_at1/119+19368774..19382538DNA topoisomerase III beta-1, putative, expressed
LOC_Os09g32450OsAffx.26538.1.S1_at1/119+19368774..19382538DNA topoisomerase III beta-1, putative, expressed
LOC_Os09g32470OsAffx.30119.1.S1_at11/119+19384217..19386594auxin-responsive family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25019.1.S1_at--327--1432Chr09:19358956..19358980 (25 bp)
AGAAGACCGGTGTCCGACCAGTCAA
LOC_Os09g32430
Os.25019.1.S1_at--527--5031Chr09:19358432..19358456 (25 bp)
GCAGTTTCCTGATACTTCGCTAGAT
LOC_Os09g32430
Os.25019.1.S1_at--579--6171Chr09:19358252..19358276 (25 bp)
GAGGATGCCACCATAGATACTGACA
LOC_Os09g32430
Os.25019.1.S1_at--912--6471NONE
GATACTGACAGGTCTTCTGAACCGA
NONE
Os.25019.1.S1_at--594--10572Chr09:19357800..19357824 (25 bp)
TTCTGAACCGACAGGAACTGGTGCT
LOC_Os09g32430
Os.25019.1.S1_at--812--7751Chr09:19357781..19357805 (25 bp)
GGTGCTACCTTCAAACCAGGGACAT
LOC_Os09g32430
Os.25019.1.S1_at--1083--5651Chr09:19357761..19357785 (25 bp)
GACATGGCAGCCACCAACTTGAATT
LOC_Os09g32430
Os.25019.1.S1_at--568--3452Chr09:19357698..19357722 (25 bp)
CAGTCAGCATCAGCATTTTCCTTTG
LOC_Os09g32430
Os.25019.1.S1_at--497--6012Chr09:19357674..19357698 (25 bp)
GAGAGTGTACTATCTTCCAGTTATT
LOC_Os09g32430
Os.25019.1.S1_at--931--8811Chr09:19357619..19357643 (25 bp)
TGATTACCACTGTACACTCCGGGAG
LOC_Os09g32430
Os.25019.1.S1_at--1104--711Chr09:19357531..19357555 (25 bp)
ATGATCATTCATGTGCCTGACTAAT
LOC_Os09g32430
Target Sequence 
AGAAGACCGGTGTCCGACCAGTCAAGACGGTTGGGAAGTTTGAATCTCCAAATCTCAAAAGTTTTATTCAGCAGTTTCCT
GATACTTCGCTAGATCAGAGAAAAGGACATGATGAGGTATCTAGATCAAAGGATGGAACTGATACAGAGGATGCCACCAT
AGATACTGACAGGTCTTCTGAACCGACAGGAACTGGTGCTACCTTCAAACCAGGGACATGGCAGCCACCAACTTGAATTA
CAACAAACATATAATTGTAGCAGGTGAAATGGTGCTGCAGTCAGCATCAGCATTTTCCTTTGAGAGTGTACTATCTTCCA
GTTATTTGATGAAGAAATGGAGATTTATTTTTACTGTGATTACCACTGTACACTCCGGGAGTTACATCAACAAATGCAGT
ATCCGGATGACAACAGATATATACTTACCAATCTTATCAAATACATGATCATTCATGTGCCTGACTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25019.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis