Browse Element(s) Details


OsAffx.30116.1.S1_at

Description tigr:9637.m02835
TID=OsAffx.30116.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AY065011 AT5g13210T31B5_30
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3237011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32340OsAffx.17983.1.S1_at11/119+19319574..19319945hypothetical protein
LOC_Os09g32350OsAffx.30115.1.S1_at9/119+19320884..19322717hypothetical protein
LOC_Os09g32360Os.53975.1.S1_at11/119+19329487..19331512expressed protein
LOC_Os09g32370OsAffx.30116.1.S1_at11/119+19332536..19334665expressed protein
LOC_Os09g32380Os.52462.1.S1_at11/119+19335293..19339062hAT family dimerisation domain containing protein, expressed
LOC_Os09g32390Os.35344.18.S1_x_at11/119+19341066..19347113transposon protein, putative, Mutator sub-class
LOC_Os09g32390Os.35344.3.S1_x_at9/119+19341066..19347113transposon protein, putative, Mutator sub-class
LOC_Os09g32390OsAffx.22940.5.S1_x_at3/119+19341066..19347113transposon protein, putative, Mutator sub-class
LOC_Os09g32400OsAffx.30117.1.S1_at11/119+19348393..19350967hypothetical protein
LOC_Os09g32400Os.27021.1.S1_x_at1/119+19348393..19350967hypothetical protein
LOC_Os09g32400Os.27021.1.S1_at1/119+19348393..19350967hypothetical protein
LOC_Os09g32410Os.49979.1.S1_at11/119+19351995..19356649F-box domain containing protein, expressed
LOC_Os09g32410OsAffx.30118.1.A1_at11/119+19351995..19356649F-box domain containing protein, expressed
LOC_Os09g32430Os.25019.1.S1_at10/119+19357507..19360582expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30116.1.S1_at--84--1911Chr09:19334079..19334103 (25 bp)
ACGTGTCCGGGAGCATGTCCGGCAC
LOC_Os09g32370
OsAffx.30116.1.S1_at--262--9671Chr09:19334136..19334160 (25 bp)
TCACGTCGGAGCTCAGCGAGGAGCC
LOC_Os09g32370
OsAffx.30116.1.S1_at--643--9331Chr09:19334226..19334250 (25 bp)
TCGCCGAGAAGCTGCGGTTCGTGCA
LOC_Os09g32370
OsAffx.30116.1.S1_at--923--711Chr09:19334342..19334366 (25 bp)
ATGATCAGGACCGTGTTCGTGTTCA
LOC_Os09g32370
OsAffx.30116.1.S1_at--931--6211Chr09:19334384..19334408 (25 bp)
GAGGCGTCGACCAACCACTGGGAGA
LOC_Os09g32370
OsAffx.30116.1.S1_at--902--1991Chr09:19334412..19334436 (25 bp)
ACTACGAGACCATCTGCAGGAAGTT
LOC_Os09g32370
OsAffx.30116.1.S1_at--51--3551Chr09:19334422..19334446 (25 bp)
CATCTGCAGGAAGTTCGGGAGCGCC
LOC_Os09g32370
OsAffx.30116.1.S1_at--630--3971Chr09:19334460..19334484 (25 bp)
CGGTGCCGCAGATCGTGTTCTGGAA
LOC_Os09g32370
OsAffx.30116.1.S1_at--1069--491Chr09:19334471..19334495 (25 bp)
ATCGTGTTCTGGAACCTTCGCGACT
LOC_Os09g32370
OsAffx.30116.1.S1_at--361--2751Chr09:19334555..19334579 (25 bp)
AAGAACCTCCTCAAGATCTTCTTGC
LOC_Os09g32370
OsAffx.30116.1.S1_at--467--9571Chr09:19334571..19334595 (25 bp)
TCTTCTTGCAGAACGATGGCGTGGT
LOC_Os09g32370
Target Sequence 
ACGTGTCCGGGAGCATGTCCGGCACGCCGATGGACGTGTGCGTGGCGCTCGGCGTGCTCACGTCGGAGCTCAGCGAGGAG
CCGTGGGCGGGGAGGGTGATCACCTTCAGCGCGAGGCCCCAGCTCCACATGATCAAGGGCAAGACCCTCGCCGAGAAGCT
GCGGTTCGTGCAGAGGATGGACTGGTGCATGAACACCAACTTCCAGGCGGTGTTCGACCAGATCCTCCGCACGGCCGTCG
ACGGCAGGCTGCCGCCGGAGAAGATGATCAGGACCGTGTTCGTGTTCAGCGACATGGAGTTCGACGAGGCGTCGACCAAC
CACTGGGAGACCGACTACGAGACCATCTGCAGGAAGTTCGGGAGCGCCGGCTACGGCGACGCGGTGCCGCAGATCGTGTT
CTGGAACCTTCGCGACTCCACGTCGACGCCGGTGACGTCGACGCAGCCCGGGGTGGCCATGGTGAGCGGCTTCTCCAAGA
ACCTCCTCAAGATCTTCTTGCAGAACGATGGCGTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30116.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis