Browse Element(s) Details


OsAffx.30117.1.S1_at

Description tigr:9637.m02838
TID=OsAffx.30117.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3240011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32360Os.53975.1.S1_at11/119+19329487..19331512expressed protein
LOC_Os09g32370OsAffx.30116.1.S1_at11/119+19332536..19334665expressed protein
LOC_Os09g32380Os.52462.1.S1_at11/119+19335293..19339062hAT family dimerisation domain containing protein, expressed
LOC_Os09g32390Os.35344.18.S1_x_at11/119+19341066..19347113transposon protein, putative, Mutator sub-class
LOC_Os09g32390Os.35344.3.S1_x_at9/119+19341066..19347113transposon protein, putative, Mutator sub-class
LOC_Os09g32390OsAffx.22940.5.S1_x_at3/119+19341066..19347113transposon protein, putative, Mutator sub-class
LOC_Os09g32400OsAffx.30117.1.S1_at11/119+19348393..19350967hypothetical protein
LOC_Os09g32400Os.27021.1.S1_x_at1/119+19348393..19350967hypothetical protein
LOC_Os09g32400Os.27021.1.S1_at1/119+19348393..19350967hypothetical protein
LOC_Os09g32410Os.49979.1.S1_at11/119+19351995..19356649F-box domain containing protein, expressed
LOC_Os09g32410OsAffx.30118.1.A1_at11/119+19351995..19356649F-box domain containing protein, expressed
LOC_Os09g32430Os.25019.1.S1_at10/119+19357507..19360582expressed protein
LOC_Os09g32440Os.5695.1.S1_at11/119+19363497..19368463Type II inositol-1,4,5-trisphosphate 5-phosphatase 12, putative, expressed
LOC_Os09g32450Os.52421.1.S1_at11/119+19368774..19382538DNA topoisomerase III beta-1, putative, expressed
LOC_Os09g32450OsAffx.17984.1.S1_at10/119+19368774..19382538DNA topoisomerase III beta-1, putative, expressed
LOC_Os09g32450Os.45957.4.S1_x_at1/119+19368774..19382538DNA topoisomerase III beta-1, putative, expressed
LOC_Os09g32450OsAffx.29179.1.S1_at1/119+19368774..19382538DNA topoisomerase III beta-1, putative, expressed
LOC_Os09g32450OsAffx.26538.1.S1_at1/119+19368774..19382538DNA topoisomerase III beta-1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30117.1.S1_at--755--7651Chr09:19349891..19349915 (25 bp)
GGGATGATACTTCTCAGGGTGGTAA
LOC_Os09g32400
OsAffx.30117.1.S1_at--551--2631Chr09:19348915..19348939 (25 bp)
AACCTCATCTTAACAGCGGGCACAT
LOC_Os09g32400
OsAffx.30117.1.S1_at--332--2491Chr09:19348904..19348928 (25 bp)
AACAGCGGGCACATTGGGCTTGGAA
LOC_Os09g32400
OsAffx.30117.1.S1_at--645--7891Chr09:19348537..19348886 (25 bp)
GGTTCATATGGCAAGAGTCTTTTGC
LOC_Os09g32400
OsAffx.30117.1.S1_at--50--8231Chr09:19348528..19348548 (21 bp)
GGCAAGAGTCTTTTGCTCTGAAGCA
LOC_Os09g32400
OsAffx.30117.1.S1_at--933--1331Chr09:19348524..19348548 (25 bp)
AGAGTCTTTTGCTCTGAAGCATTTG
LOC_Os09g32400
OsAffx.30117.1.S1_at--67--7971Chr09:19348500..19348524 (25 bp)
GGATCTCAGCGATTGCAGAGAGATG
LOC_Os09g32400
OsAffx.30117.1.S1_at--900--4631Chr09:19348492..19348516 (25 bp)
GCGATTGCAGAGAGATGGTGTATCT
LOC_Os09g32400
OsAffx.30117.1.S1_at--893--1551Chr09:19348439..19348463 (25 bp)
AGCTACCTGGATGTGTCCTCGTGCC
LOC_Os09g32400
OsAffx.30117.1.S1_at--966--771Chr09:19348429..19348453 (25 bp)
ATGTGTCCTCGTGCCGTCTGCAAAT
LOC_Os09g32400
OsAffx.30117.1.S1_at--560--4291Chr09:19348423..19348447 (25 bp)
CCTCGTGCCGTCTGCAAATGATAGA
LOC_Os09g32400
Target Sequence 
GGGATGATACTTCTCAGGGTGGTAAAAGATTGAGATATTCAGAGCCATACCTCACGGAGGACATTTGGCGCCATATACAT
TCCCTAATGCCGCTGCGAGATGCTGCCCGTGCTGCCTGTATATCTCAAGCATTTCTTCGTTCCTGGAGACGCTATCCTAA
CCTCATCTTAACAGCGGGCACATTGGGCTTGGAACTGAGAAAAAATTGGAAGGTTCATATGGCAAGAGTCTTTTGCTCTG
AAGCATTTGGATCTCAGCGATTGCAGAGAGATGGTGTATCTGAAGATACCATGTTCGCTGGAGCAACTCAGCTACCTGGA
TGTGTCCTCGTGCCGTCTGCAAATGATAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30117.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis