Browse Element(s) Details


OsAffx.26538.1.S1_at

Description tigr:9632.m04788
TID=OsAffx.26538.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=gene_id:MJG14.20
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4934010/11tRNA-splicing endonuclease positive effector, putative, expressed
LOC_Os09g324501/11DNA topoisomerase III beta-1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49300NANA4+29204866..29209420retrotransposon protein, putative, LINE subclass
LOC_Os04g49310Os.54676.1.S1_at11/114+29211921..29215294expressed protein
LOC_Os04g49320Os.24691.1.A1_s_at11/114+29218811..29222824tRNA-splicing endonuclease positive effector, putative, expressed
LOC_Os04g49320Os.27955.2.S1_at1/114+29218811..29222824tRNA-splicing endonuclease positive effector, putative, expressed
LOC_Os04g49329NANA4+29227531..29228170NA
LOC_Os04g49340OsAffx.26538.1.S1_at10/114+29229721..29233325tRNA-splicing endonuclease positive effector, putative, expressed
LOC_Os04g49350Os.15142.1.S1_at11/114+29236771..29239032pentatricopeptide, putative, expressed
LOC_Os04g49360NANA4+29239530..29240504F-box domain containing protein, expressed
LOC_Os04g49370Os.26511.1.S1_at11/114+29246807..29247934expressed protein
LOC_Os04g49380OsAffx.25217.1.S1_x_at9/114+29249458..29256274transposon protein, putative, unclassified
LOC_Os04g49380OsAffx.25217.2.S1_x_at5/114+29249458..29256274transposon protein, putative, unclassified
LOC_Os04g49394Os.33624.3.S1_x_at11/114+29257003..29261969Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os04g49394OsAffx.14342.1.S1_at11/114+29257003..29261969Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os04g49394OsAffx.25216.1.S1_x_at7/114+29257003..29261969Ulp1 protease family, C-terminal catalytic domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006265biological_processDNA topological change
GO:0006268biological_processDNA unwinding during replication
GO:0003677molecular_functionDNA binding
GO:0003916molecular_functionDNA topoisomerase activity
GO:0003917molecular_functionDNA topoisomerase type I activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26538.1.S1_at--346--6951Chr04:29230937..29230961 (25 bp)
GTAGAGAGGATCCTGGCCGCAACAA
LOC_Os04g49340
OsAffx.26538.1.S1_at--774--431NONE
ATCTATGCAAAGCTTGCGTCGGTAC
NONE
OsAffx.26538.1.S1_at--275--6931Chr04:29230325..29230349 (25 bp)
GTAGGCATCATATGCCCGTATGCCG
LOC_Os04g49340
OsAffx.26538.1.S1_at--790--6491Chr04:29230275..29230299 (25 bp)
GATAGATGCGAACGCTGTTCGCCCG
LOC_Os04g49340
OsAffx.26538.1.S1_at--919--1991Chr04:29230234..29230258 (25 bp)
ACTCCGTCGACGGTTTCCAAGGCAG
LOC_Os04g49340
OsAffx.26538.1.S1_at--346--3351Chr04:29230185..29230209 (25 bp)
CACCGTCAGGTCCAACAGTACAGGA
LOC_Os04g49340
OsAffx.26538.1.S1_at--466--1171Chr04:29230169..29230193 (25 bp)
AGTACAGGATCCATCGGTTTCCTCT
LOC_Os04g49340
OsAffx.26538.1.S1_at--1007--2911Chr04:29229964..29229987 (24 bp)
AAGGCATTGCCTCTGGATCCTGGGC
LOC_Os04g49340
OsAffx.26538.1.S1_at--986--8512Chr09:19373896..19374187 (25 bp)
TGGACGATGCGGTCGAGTTCGCTAC
LOC_Os09g32450
OsAffx.26538.1.S1_at--625--7211Chr04:29229789..29229813 (25 bp)
GTCGAGTTCGCTACGGCGTTTGACA
LOC_Os04g49340
OsAffx.26538.1.S1_at--34--8351Chr04:29229775..29229799 (25 bp)
GGCGTTTGACACGTTCGCAGACGAA
LOC_Os04g49340
Target Sequence 
GTAGAGAGGATCCTGGCCGCAACAAGAGAAACATGGCAGAGGTGGCTGCCATCAAGAAAATACTGCATAATCTATGCAAA
GCTTGCGTCGGTACAGGGGAAGGGGTTAGCGTAGGCATCATATGCCCGTATGCCGCCCAGGTGGAGGCGATCCAGAGCGG
GATAGATGCGAACGCTGTTCGCCCGCTAGACGTGCGCGTCAACTCCGTCGACGGTTTCCAAGGCAGCGAGGAGGACATCA
TCATCCTGTCCACCGTCAGGTCCAACAGTACAGGATCCATCGGTTTCCTCTCCAACCGTCGCCGCGCCAACGTCGCCCTG
ACAAGGGCAAGGCATTGCCTCTGGATCCTGGGCGACGCGGCGACGTTGCTCGGCAGCGGCTCCGTCTGGGGGGAGCTGGT
CCGGGACGCCGTGGATCGCCGGTGCTTCTACGACTGGGACGACGGCGGCGCTGGTTTGCTCGGCGTTGCTCGGCGCGGAC
ACGAGGACGAGCTGGACGATGCGGTCGAGTTCGCTACGGCGTTTGACACGTTCGCAGACGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26538.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis