Browse Element(s) Details


Os.15142.1.S1_at

Description gb:AK065769.1
DB_XREF= gi:32975787
TID=Os.15142.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.15142 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013132A21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013040G18, full insert sequence.
FL= gb:AK065769.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4935011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49310Os.54676.1.S1_at11/114+29211921..29215294expressed protein
LOC_Os04g49320Os.24691.1.A1_s_at11/114+29218811..29222824tRNA-splicing endonuclease positive effector, putative, expressed
LOC_Os04g49320Os.27955.2.S1_at1/114+29218811..29222824tRNA-splicing endonuclease positive effector, putative, expressed
LOC_Os04g49329NANA4+29227531..29228170NA
LOC_Os04g49340OsAffx.26538.1.S1_at10/114+29229721..29233325tRNA-splicing endonuclease positive effector, putative, expressed
LOC_Os04g49350Os.15142.1.S1_at11/114+29236771..29239032pentatricopeptide, putative, expressed
LOC_Os04g49360NANA4+29239530..29240504F-box domain containing protein, expressed
LOC_Os04g49370Os.26511.1.S1_at11/114+29246807..29247934expressed protein
LOC_Os04g49380OsAffx.25217.1.S1_x_at9/114+29249458..29256274transposon protein, putative, unclassified
LOC_Os04g49380OsAffx.25217.2.S1_x_at5/114+29249458..29256274transposon protein, putative, unclassified
LOC_Os04g49394Os.33624.3.S1_x_at11/114+29257003..29261969Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os04g49394OsAffx.14342.1.S1_at11/114+29257003..29261969Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os04g49394OsAffx.25216.1.S1_x_at7/114+29257003..29261969Ulp1 protease family, C-terminal catalytic domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15142.1.S1_at--237--10131Chr04:29238526..29238550 (25 bp)
TATGCAAGGCACACGACTGGACAGG
LOC_Os04g49350
Os.15142.1.S1_at--606--911Chr04:29238551..29238575 (25 bp)
AGGCTGTACCTGACCGTGTTGAGGA
LOC_Os04g49350
Os.15142.1.S1_at--591--6071Chr04:29238662..29238686 (25 bp)
GAGTTATCTGTGCTGTTCATCTTCA
LOC_Os04g49350
Os.15142.1.S1_at--352--5391Chr04:29238692..29238716 (25 bp)
GAAGCATCGCGACGATCGGGTATCT
LOC_Os04g49350
Os.15142.1.S1_at--839--2251Chr04:29238756..29238780 (25 bp)
AAATATTTGCTTGCCTCAATGCGCT
LOC_Os04g49350
Os.15142.1.S1_at--995--4451Chr04:29238768..29238792 (25 bp)
GCCTCAATGCGCTTTGTCGAAACTA
LOC_Os04g49350
Os.15142.1.S1_at--1065--251Chr04:29238792..29238816 (25 bp)
ATATGCTTATGCTGCTGGCTTCCAA
LOC_Os04g49350
Os.15142.1.S1_at--1008--7631Chr04:29238838..29238862 (25 bp)
GGGAGATACACCTTTGTACCAGTAA
LOC_Os04g49350
Os.15142.1.S1_at--215--2011Chr04:29238931..29238955 (25 bp)
ACTCACTTGTAATATAGCCCTCTTC
LOC_Os04g49350
Os.15142.1.S1_at--383--4531Chr04:29238947..29238971 (25 bp)
GCCCTCTTCGGCAAATGTAACTTTT
LOC_Os04g49350
Os.15142.1.S1_at--275--9671Chr04:29239000..29239024 (25 bp)
TCAGCGCTTAACATCTTTTCGAATC
LOC_Os04g49350
Target Sequence 
TATGCAAGGCACACGACTGGACAGGAGGCTGTACCTGACCGTGTTGAGGAGCCTCCGAGACGCCGGGCTGGAGGTCCATG
TGAAGTGGCTCCAAACTAATTTCAGTTTCGTGGAAGAGAAAACCTGATGGATCCATGAGTTATCTGTGCTGTTCATCTTC
AGCACCGAAGCATCGCGACGATCGGGTATCTGCAAAAGCATTGCTCTGTACATCGACAGAAAAAATGGGTAAATATTTGC
TTGCCTCAATGCGCTTTGTCGAAACTATATGCTTATGCTGCTGGCTTCCAACCGCCATTGTAAATGTATTCTGGGAGATA
CACCTTTGTACCAGTAATGATCTGATTACAGATTTATTGGATAAGTTGCATTGCTCAGTAGATCTGCATTTGCCAGATTT
ATTGAACTCACTTGTAATATAGCCCTCTTCGGCAAATGTAACTTTTGCATCAGTACTGAACTTTGTACATTTCTTCAGCG
CTTAACATCTTTTCGAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15142.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis