Browse Element(s) Details


Os.24691.1.A1_s_at

Description gb:CA762408
DB_XREF= gi:25806447
DB_XREF=BR060009A20A12.ab1
CLONE=BR060009A20A12.ab1
TID=Os.24691.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.24691 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_198519.1 (A.thaliana) SEN1-like protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4932011/11tRNA-splicing endonuclease positive effector, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49270OsAffx.14339.1.S1_at11/114+29193644..29197750hypothetical protein
LOC_Os04g49280OsAffx.14340.1.S1_at11/114+29198531..29199912hypothetical protein
LOC_Os04g49290OsAffx.21085.1.S1_at8/114+29200004..29204367retrotransposon protein, putative, unclassified, expressed
LOC_Os04g49300NANA4+29204866..29209420retrotransposon protein, putative, LINE subclass
LOC_Os04g49310Os.54676.1.S1_at11/114+29211921..29215294expressed protein
LOC_Os04g49320Os.24691.1.A1_s_at11/114+29218811..29222824tRNA-splicing endonuclease positive effector, putative, expressed
LOC_Os04g49320Os.27955.2.S1_at1/114+29218811..29222824tRNA-splicing endonuclease positive effector, putative, expressed
LOC_Os04g49329NANA4+29227531..29228170NA
LOC_Os04g49340OsAffx.26538.1.S1_at10/114+29229721..29233325tRNA-splicing endonuclease positive effector, putative, expressed
LOC_Os04g49350Os.15142.1.S1_at11/114+29236771..29239032pentatricopeptide, putative, expressed
LOC_Os04g49360NANA4+29239530..29240504F-box domain containing protein, expressed
LOC_Os04g49370Os.26511.1.S1_at11/114+29246807..29247934expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24691.1.A1_s_at--822--2371Chr04:29220008..29220032 (25 bp)
AAACCGGCAGCGCACAAATGTGTCA
LOC_Os04g49320
Os.24691.1.A1_s_at--367--7451Chr04:29219990..29220013 (24 bp)
GTGTCACTTACACGAGCAAGGTATT
LOC_Os04g49320
Os.24691.1.A1_s_at--406--451Chr04:29219833..29219857 (25 bp)
ATCTAGGTCTGGCTCTATCTGGGCA
LOC_Os04g49320
Os.24691.1.A1_s_at--439--9471Chr04:29219816..29219840 (25 bp)
TCTGGGCAGATCTAGTTCGTGACGC
LOC_Os04g49320
Os.24691.1.A1_s_at--1091--351Chr04:29219756..29219780 (25 bp)
ATAAGGATATCTCCCGTGTGCTTGC
LOC_Os04g49320
Os.24691.1.A1_s_at--1103--10171Chr04:29219072..29219092 (21 bp)
TTTGGGTTCAAGTGCCATCCCGAAG
LOC_Os04g49320
Os.24691.1.A1_s_at--490--8971Chr04:29219035..29219059 (25 bp)
TGAAAGCCCTTCAACTTCAACTGGC
LOC_Os04g49320
Os.24691.1.A1_s_at--36--10511Chr04:29219020..29219044 (25 bp)
TTCAACTGGCATTGGTGGTTTCCCC
LOC_Os04g49320
Os.24691.1.A1_s_at--800--2611Chr04:29218910..29218934 (25 bp)
AACCCTATACTTGAGTTGGCACCAG
LOC_Os04g49320
Os.24691.1.A1_s_at--742--8251Chr04:29218893..29218917 (25 bp)
GGCACCAGGGCGTCAGAGTATATAT
LOC_Os04g49320
Os.24691.1.A1_s_at--58--8831Chr04:29218856..29218880 (25 bp)
TGATCAGGTGCCCAAATCCCAAACA
LOC_Os04g49320
Target Sequence 
AAACCGGCAGCGCACAAATGTGTCACTTACACGAGCAAGGTATTGCCTTTGGATTTTGGGAAATGCAACAACCTTATCTA
GGTCTGGCTCTATCTGGGCAGATCTAGTTCGTGACGCGAAGGATCGACAGTGTTTTTTCAACGCAAACAGTGATAAGGAT
ATCTCCCGTGTGCTTGCTAAGCACAAAATTGAGACCAATAAAGTTAAGGATAGAAAGAGTACCCCATTCAAAGTCAGAAA
TAGTGGGGTTTGGGTTCAAGTGCCATCCCGAAGTGGGATGAAAGATGAAAGCCCTTCAACTTCAACTGGCATTGGTGGTT
TCCCCGGGGATACAGAAGAAAATGTAGAGGATATCCCCGTATGCTTAAGTAATCTTAAAATTCGTTGAGGATTTTACACT
CTGTTTCTGAAACCCTATACTTGAGTTGGCACCAGGGCGTCAGAGTATATATAAGCAGTATTGTTGATCAGGTGCCCAAA
TCCCAAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24691.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis