Browse Element(s) Details


Os.54676.1.S1_at

Description gb:AK106444.1
DB_XREF= gi:32991653
TID=Os.54676.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54676 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-103-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-E01, full insert sequence.
FL= gb:AK106444.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4931011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49260Os.55252.1.S1_at8/114+29189821..29190528copper-binding protein, putative, expressed
LOC_Os04g49270OsAffx.14339.1.S1_at11/114+29193644..29197750hypothetical protein
LOC_Os04g49280OsAffx.14340.1.S1_at11/114+29198531..29199912hypothetical protein
LOC_Os04g49290OsAffx.21085.1.S1_at8/114+29200004..29204367retrotransposon protein, putative, unclassified, expressed
LOC_Os04g49300NANA4+29204866..29209420retrotransposon protein, putative, LINE subclass
LOC_Os04g49310Os.54676.1.S1_at11/114+29211921..29215294expressed protein
LOC_Os04g49320Os.24691.1.A1_s_at11/114+29218811..29222824tRNA-splicing endonuclease positive effector, putative, expressed
LOC_Os04g49320Os.27955.2.S1_at1/114+29218811..29222824tRNA-splicing endonuclease positive effector, putative, expressed
LOC_Os04g49329NANA4+29227531..29228170NA
LOC_Os04g49340OsAffx.26538.1.S1_at10/114+29229721..29233325tRNA-splicing endonuclease positive effector, putative, expressed
LOC_Os04g49350Os.15142.1.S1_at11/114+29236771..29239032pentatricopeptide, putative, expressed
LOC_Os04g49360NANA4+29239530..29240504F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54676.1.S1_at--410--5011Chr04:29212813..29212837 (25 bp)
GCAGGTTTCCAGTTGCTACATTTTA
LOC_Os04g49310
Os.54676.1.S1_at--236--2191Chr04:29212425..29212449 (25 bp)
ACAAAGCAAGCTCTCTGTTGGTGTT
LOC_Os04g49310
Os.54676.1.S1_at--879--8671Chr04:29212401..29212425 (25 bp)
TGTGTCCCCATACAATGCTCAAGTT
LOC_Os04g49310
Os.54676.1.S1_at--548--5711Chr04:29212336..29212360 (25 bp)
GACTCGATGCATATAAGCCGGCCAA
LOC_Os04g49310
Os.54676.1.S1_at--737--2951Chr04:29212208..29212232 (25 bp)
AAGGCCAAACTACCGTTCATGAGAA
LOC_Os04g49310
Os.54676.1.S1_at--13--6571Chr04:29212168..29212192 (25 bp)
GATTCAGTTTGTCTGGACGCTTGAA
LOC_Os04g49310
Os.54676.1.S1_at--1077--911Chr04:29212121..29212145 (25 bp)
AGGCTTGTTTGTTCAGTTGTCACTC
LOC_Os04g49310
Os.54676.1.S1_at--1081--6651Chr04:29212050..29212074 (25 bp)
GTTGCTGACAATGTGAGCCCTACAT
LOC_Os04g49310
Os.54676.1.S1_at--945--5871Chr04:29212036..29212060 (25 bp)
GAGCCCTACATTTTGTTGAACCATA
LOC_Os04g49310
Os.54676.1.S1_at--885--8911Chr04:29212011..29212035 (25 bp)
TGAGCTTTTGATGCACGCTGGTTGC
LOC_Os04g49310
Os.54676.1.S1_at--541--1831Chr04:29211997..29212021 (25 bp)
ACGCTGGTTGCTCAAGCTCACTTAT
LOC_Os04g49310
Target Sequence 
GCAGGTTTCCAGTTGCTACATTTTATGATGGCAAGATATCTGACGGCTCCAATGTCACTACTGAGAAGAATGGTCGTAGC
CTGAAAAACACAATAGAAGTTGCTACAGTTTTGAGAATAGTTCAGAGATTATTCAAAGAAGCAGTTTCTACACAAAGCAA
GCTCTCTGTTGGTGTTGTGTCCCCATACAATGCTCAAGTTAGAGCTATCCAGGAGAAAGTCGGTAAATTTATCAAAAATG
GACTCGATGCATATAAGCCGGCCAAGGTTTCAGAAACCAAGGCCAAACTACCGTTCATGAGAAGTCTGAAGCTTGCAAGA
TTCAGTTTGTCTGGACGCTTGAAATATCGTATGGCGTCGGTGTCAAGGCTTGTTTGTTCAGTTGTCACTCGGGTTTGCCG
AAGGAAGAAAACCATGTGTGTTACTGTTAGTATTGTGTTGCTGACAATGTGAGCCCTACATTTTGTTGAACCATATGAGC
TTTTGATGCACGCTGGTTGCTCAAGCTCACTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54676.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis