Browse Element(s) Details


OsAffx.25217.1.S1_x_at

Description gb:NM_184792.1
DB_XREF= gi:34896673
GEN=OSJNBa0087M10.3
TID=OsAffx.25217.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative far-red impaired response protein (OSJNBa0087M10.3), mRNA.
PROD=putative far-red impaired response protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4016011/11transposon protein, putative, unclassified
LOC_Os04g493809/11transposon protein, putative, unclassified
LOC_Os04g308708/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g40110Os.20699.2.S1_x_at11/113+22240343..22247189Nop14-like family protein, expressed
LOC_Os03g40110Os.20699.1.S1_at11/113+22240343..22247189Nop14-like family protein, expressed
LOC_Os03g40110Os.23213.1.S1_at1/113+22240343..22247189Nop14-like family protein, expressed
LOC_Os03g40120NANA3+22249998..22250516hypothetical protein
LOC_Os03g40130OsAffx.25446.1.S1_at11/113+22253199..22254759universal stress protein family protein
LOC_Os03g40150Os.33624.3.S1_x_at11/113+22264996..22268465hypothetical protein
LOC_Os03g40150OsAffx.25216.1.S1_x_at7/113+22264996..22268465hypothetical protein
LOC_Os03g40160OsAffx.25217.1.S1_x_at11/113+22269012..22276271transposon protein, putative, unclassified
LOC_Os03g40160OsAffx.25217.2.S1_x_at4/113+22269012..22276271transposon protein, putative, unclassified
LOC_Os03g40170Os.30983.1.S1_at11/113+22286936..22289703Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g40170Os.30983.2.S1_x_at11/113+22286936..22289703Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g40180Os.11582.1.S1_s_at11/113+22291275..2229292760S ribosomal protein L15, putative, expressed
LOC_Os03g40180Os.11582.2.S1_at11/113+22291275..2229292760S ribosomal protein L15, putative, expressed
LOC_Os03g40194OsAffx.13260.2.S1_at11/113+22295982..22305019DSBA-like thioredoxin domain containing protein, expressed
LOC_Os03g40194OsAffx.13260.1.S1_s_at11/113+22295982..22305019DSBA-like thioredoxin domain containing protein, expressed
LOC_Os03g40194Os.10592.1.S1_at7/113+22295982..22305019DSBA-like thioredoxin domain containing protein, expressed
LOC_Os03g40194Os.8905.1.S1_at2/113+22295982..22305019DSBA-like thioredoxin domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25217.1.S1_x_at--299--6631Chr03:22271294..22271318 (25 bp)
GTTGTCATTGCTCACAGTTACCACA
LOC_Os03g40160
OsAffx.25217.1.S1_x_at--328--10711Chr03:22271287..22271311 (25 bp)
TTGCTCACAGTTACCACAGTACAAG
LOC_Os03g40160
OsAffx.25217.1.S1_x_at--1059--2493Chr04:29254496..29254520 (25 bp)
AACATTCAAATGCAATCGACATGGA
LOC_Os04g49380
OsAffx.25217.1.S1_x_at--844--2653Chr04:29254594..29254618 (25 bp)
AAGCCACAAGTTGTAACTGTGCACT
LOC_Os04g49380
OsAffx.25217.1.S1_x_at--965--2532Chr04:29254608..29254632 (25 bp)
AACTGTGCACTGGTAATTTCTAAGA
LOC_Os04g49380
OsAffx.25217.1.S1_x_at--93--5353Chr04:29254699..29254722 (24 bp)
GAAGTTAGATTCTTGAAGTCACACA
LOC_Os04g49380
OsAffx.25217.1.S1_x_at--309--653Chr04:29254769..29254793 (25 bp)
ATGCAATATTCCCACAAGGCATATG
LOC_Os04g49380
OsAffx.25217.1.S1_x_at--243--3273Chr04:29254807..29254831 (25 bp)
CAACTTTGAGAGGAGGGCTGACATC
LOC_Os04g49380
OsAffx.25217.1.S1_x_at--387--973Chr04:29254817..29254841 (25 bp)
AGGAGGGCTGACATCTTTGCCTTAT
LOC_Os04g49380
OsAffx.25217.1.S1_x_at--792--4753Chr04:29254823..29254847 (25 bp)
GCTGACATCTTTGCCTTATACTAAG
LOC_Os04g49380
OsAffx.25217.1.S1_x_at--185--6334Chr04:29254904..29254928 (25 bp)
GATGCAAGTTCTTCAATTTTTCAGA
LOC_Os04g49380
Target Sequence 
GTTGTCATTGCTCACAGTTACCACAGTACAAGCAAAAAAAGGAATGGAGAAGTGATTAGAGTAACATTCAAATGCAATCG
ACATGGAAAAGCAAAGTCAGAATCACAAGAAGAAGAAACAGAAGAGACAGTAGTAGCAGAGAGAAACAATAATGAGATTA
AAGCCACAAGTTGTAACTGTGCACTGGTAATTTCTAAGAGAAATTTGATTTGGAGAATTATAAGGGTTAATTTAGATCAC
AATCATAAGATGAGTCCAAGAGATGAAGTTAGATTCTTGAAGTCACACAAAAATATGACAACAGAAGAGAAAATGATGAT
AAGGACACTAAAGGAATGCAATATTCCCACAAGGCATATGATTGTGATTTTGTCAACTTTGAGAGGAGGGCTGACATCTT
TGCCTTATACTAAGAAGGATGTTAGTAATGTGAGAACTTGTATAAATAAAGAGACAAGTAGCAATGATATGATGCAAGTT
CTTCAATTTTTCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25217.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis