Browse Element(s) Details


Os.11582.1.S1_s_at

Description gb:AK066806.1
DB_XREF= gi:32976824
TID=Os.11582.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11582 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ribosomal protein L15 (OJ1523_A02.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013079I04, full insert sequence.
FL= gb:AK066806.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1937011/1160S ribosomal protein L15, putative, expressed
LOC_Os03g4018011/1160S ribosomal protein L15, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g19310Os.27691.1.S1_x_at6/115+11201165..11204748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19310Os.27691.2.S1_x_at2/115+11201165..11204748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19320NANA5+11205052..11205642retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19330OsAffx.447.1.S1_at5/115+11208565..11213115retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19330OsAffx.22947.2.S1_x_at1/115+11208565..11213115retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19330Os.52609.1.S1_at1/115+11208565..11213115retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19330OsAffx.22947.1.S1_x_at1/115+11208565..11213115retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19340NANA5+11213314..11214063retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19350NANA5+11216239..11218409retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19360OsAffx.4379.1.S1_at11/115+11225223..11226126hypothetical protein
LOC_Os05g19370Os.11582.1.S1_s_at11/115+11227443..1122949460S ribosomal protein L15, putative, expressed
LOC_Os05g19380Os.49087.1.A1_at11/115+11232855..11235829pentatricopeptide, putative, expressed
LOC_Os05g19390OsAffx.14760.1.S1_at11/115+11241112..11243931pentatricopeptide, putative, expressed
LOC_Os05g19400NANA5+11249699..11250850hypothetical protein
LOC_Os05g19410OsAffx.22947.1.S1_x_at8/115+11251842..11256416retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19410OsAffx.22947.2.S1_x_at8/115+11251842..11256416retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19410OsAffx.22947.3.S1_x_at7/115+11251842..11256416retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19410OsAffx.22947.5.S1_x_at3/115+11251842..11256416retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11582.1.S1_s_at--1106--8432Chr05:11228825..11228849 (25 bp)
GGCCAGTGCCCAAGGGTATTGTCTA
LOC_Os05g19370
Os.11582.1.S1_s_at--384--1813Chr06:11694550..11694574 (25 bp)
ACCCAGCTCAAGTTCCAGAGGAACA
NONE
Os.11582.1.S1_s_at--426--4353Chr06:11694564..11694588 (25 bp)
CCAGAGGAACAAGAGGTCAGTTGCT
NONE
Os.11582.1.S1_s_at--222--7712Chr05:11228948..11228972 (25 bp)
GGGTGCTCAACTCCTACTGGGTGAA
LOC_Os05g19370
Os.11582.1.S1_s_at--181--952Chr05:11229068..11229092 (25 bp)
AGGACTCCACCTACAAGTACTTTGA
LOC_Os05g19370
Os.11582.1.S1_s_at--1148--2833Chr06:11694762..11694782 (21 bp)
AAGTACTTTGAGATCATCCTTGTGG
NONE
Os.11582.1.S1_s_at--1045--413Chr06:11694770..11694794 (25 bp)
ATCATCCTTGTGGATGTTGCTCACA
NONE
Os.11582.1.S1_s_at--507--4872Chr05:11229121..11229145 (25 bp)
GCTATCCGCAATGACCCAAGGATCA
LOC_Os05g19370
Os.11582.1.S1_s_at--636--1813Chr06:11694812..11694835 (24 bp)
ACCCAAGGATCAACTGGCTCTGCAA
NONE
Os.11582.1.S1_s_at--206--8333Chr06:11694826..11694850 (25 bp)
GGCTCTGCAAGCCTGTGCACAAGCA
NONE
Os.11582.1.S1_s_at--724--1752Chr05:11229193..11229217 (25 bp)
ACCTCTGCTGGCAAGAAGTACCGTG
LOC_Os05g19370
Target Sequence 
GGCCAGTGCCCAAGGGTATTGTCTACGGCAAGCCCAAGCACCAGGGTATCACCCAGCTCAAGTTCCAGAGGAACAAGAGG
TCAGTTGCTGAGGAGAGAGCTGGGCGCAAGTTGGGCGGACTCAGGGTGCTCAACTCCTACTGGGTGAACGAGGACTCCAC
CTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGTGCTATCCGCAATGACCCAAGGATCAACTGGCTCTGCA
AGCCTGTGCACAAGCACCATGAGCTCCGTGGTCTCACCTCTGCTGGCAAGAAGTACCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11582.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis