Browse Element(s) Details


Os.49087.1.A1_at

Description gb:AK067135.1
DB_XREF= gi:32977153
TID=Os.49087.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49087 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013094C24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013094C24, full insert sequence.
FL= gb:AK067135.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1938011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g19330OsAffx.447.1.S1_at5/115+11208565..11213115retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19330OsAffx.22947.2.S1_x_at1/115+11208565..11213115retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19330Os.52609.1.S1_at1/115+11208565..11213115retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19330OsAffx.22947.1.S1_x_at1/115+11208565..11213115retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19340NANA5+11213314..11214063retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19350NANA5+11216239..11218409retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19360OsAffx.4379.1.S1_at11/115+11225223..11226126hypothetical protein
LOC_Os05g19370Os.11582.1.S1_s_at11/115+11227443..1122949460S ribosomal protein L15, putative, expressed
LOC_Os05g19380Os.49087.1.A1_at11/115+11232855..11235829pentatricopeptide, putative, expressed
LOC_Os05g19390OsAffx.14760.1.S1_at11/115+11241112..11243931pentatricopeptide, putative, expressed
LOC_Os05g19400NANA5+11249699..11250850hypothetical protein
LOC_Os05g19410OsAffx.22947.1.S1_x_at8/115+11251842..11256416retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19410OsAffx.22947.2.S1_x_at8/115+11251842..11256416retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19410OsAffx.22947.3.S1_x_at7/115+11251842..11256416retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19410OsAffx.22947.5.S1_x_at3/115+11251842..11256416retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19420NANA5+11258097..11258522retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49087.1.A1_at--846--7131Chr05:11233321..11233345 (25 bp)
GTCATTTTTATCTTTGTGTGCTCTT
LOC_Os05g19380
Os.49087.1.A1_at--173--451Chr05:11233312..11233336 (25 bp)
ATCTTTGTGTGCTCTTCAAGGATAT
LOC_Os05g19380
Os.49087.1.A1_at--626--7531Chr05:11233220..11233244 (25 bp)
GTGGCACGCTACTGCACCAAATGGT
LOC_Os05g19380
Os.49087.1.A1_at--765--791Chr05:11233200..11233224 (25 bp)
ATGGTGCCGCACAACGTCAAATTAA
LOC_Os05g19380
Os.49087.1.A1_at--58--9851Chr05:11233178..11233202 (25 bp)
TAAATGGATTTTCCTCTCATCTTCA
LOC_Os05g19380
Os.49087.1.A1_at--482--3751Chr05:11233163..11233187 (25 bp)
CTCATCTTCAACAGGTGTACAGTGT
LOC_Os05g19380
Os.49087.1.A1_at--895--8991Chr05:11233133..11233157 (25 bp)
TGAAGTCACATTCGCGGTGCCTAAG
LOC_Os05g19380
Os.49087.1.A1_at--845--7851Chr05:11233098..11233122 (25 bp)
GGTAGATTGTCCGATTGTTTTGAAG
LOC_Os05g19380
Os.49087.1.A1_at--819--1111Chr05:11233053..11233077 (25 bp)
AGTGCAACTTAATCGGTTAGCAGCA
LOC_Os05g19380
Os.49087.1.A1_at--167--831Chr05:11232960..11232984 (25 bp)
ATGGTTTCTATAGGGCTAACCTGTT
LOC_Os05g19380
Os.49087.1.A1_at--1118--5191Chr05:11232891..11232915 (25 bp)
GAATACCGTGTTAGACTTTTGAACT
LOC_Os05g19380
Target Sequence 
GTCATTTTTATCTTTGTGTGCTCTTCAAGGATATGGAGTTTCCAAGTTTTGATAGGGAAGTCAGTGTAGTATTACTTGTG
AAGAGCNTGCNATTTGCCATGGGTGGCACGCTACTGCACCAAATGGTGCCGCACAACGTCAAATTAAATGGATTTTCCTC
TCATCTTCAACAGGTGTACAGTGTACTTNTGAAGTCACATTCGCGGTGCCTAAGTACAGAATNTGGTAGATTGTCCGATT
GTTTTGAAGAGTCAAGATTGATTTGATNTAGTGCAACTTAATCGGTTAGCAGCATTATCAATTTNTTATGGACTGGATTG
TCCATGTGTTNTNNNNATTTTNCAGGTCANCTTGTTTANGCTTGAATGGTTTCTATAGGGCTAACCTGTTTATAAAAAAA
AAATGTAGAATACCATGTTTTTTTTGACGCAATAGAATACCGTGTTAGACTTTTGAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49087.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis