Browse Element(s) Details


OsAffx.13260.1.S1_s_at

Description gb:NM_184863.1
DB_XREF= gi:34896815
GEN=OJ1523_A02.16
TID=OsAffx.13260.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative NBS-LRR type resistance protein (OJ1523_A02.16), mRNA.
PROD=putative NBS-LRR type resistance protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4019411/11DSBA-like thioredoxin domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g40160OsAffx.25217.1.S1_x_at11/113+22269012..22276271transposon protein, putative, unclassified
LOC_Os03g40160OsAffx.25217.2.S1_x_at4/113+22269012..22276271transposon protein, putative, unclassified
LOC_Os03g40170Os.30983.1.S1_at11/113+22286936..22289703Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g40170Os.30983.2.S1_x_at11/113+22286936..22289703Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g40180Os.11582.1.S1_s_at11/113+22291275..2229292760S ribosomal protein L15, putative, expressed
LOC_Os03g40180Os.11582.2.S1_at11/113+22291275..2229292760S ribosomal protein L15, putative, expressed
LOC_Os03g40194OsAffx.13260.2.S1_at11/113+22295982..22305019DSBA-like thioredoxin domain containing protein, expressed
LOC_Os03g40194OsAffx.13260.1.S1_s_at11/113+22295982..22305019DSBA-like thioredoxin domain containing protein, expressed
LOC_Os03g40194Os.10592.1.S1_at7/113+22295982..22305019DSBA-like thioredoxin domain containing protein, expressed
LOC_Os03g40194Os.8905.1.S1_at2/113+22295982..22305019DSBA-like thioredoxin domain containing protein, expressed
LOC_Os03g40210OsAffx.25447.1.S1_at10/113+22307265..22309410hypothetical protein
LOC_Os03g40220OsAffx.10237.1.S1_at1/113+22312331..22314326transposon protein, putative, unclassified
LOC_Os03g40220OsAffx.16318.1.S1_x_at1/113+22312331..22314326transposon protein, putative, unclassified
LOC_Os03g40230OsAffx.25448.1.S1_at11/113+22315656..22316323hypothetical protein
LOC_Os03g40240NANA3+22320341..22321433hypothetical protein
LOC_Os03g40250Os.29772.3.S1_x_at11/113+22323928..22325844Leucine Rich Repeat family protein, expressed
LOC_Os03g40250Os.29772.1.S1_at10/113+22323928..22325844Leucine Rich Repeat family protein, expressed
LOC_Os03g40260Os.52337.1.S1_at11/113+22328243..22334802regulator of chromosome condensation, putative, expressed
LOC_Os03g40260OsAffx.22679.1.S1_x_at11/113+22328243..22334802regulator of chromosome condensation, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13260.1.S1_s_at--610--5931Chr03:22304343..22304367 (25 bp)
GAGCATCAGGGAGCACGGTCATTGT
LOC_Os03g40194
OsAffx.13260.1.S1_s_at--191--5791Chr03:22304318..22304342 (25 bp)
GACGACCCGTGAACTTTGTGTTGCA
LOC_Os03g40194
OsAffx.13260.1.S1_s_at--291--10031Chr03:22304286..22304310 (25 bp)
TAGAAGCACCTGCATCTGGCATCAT
LOC_Os03g40194
OsAffx.13260.1.S1_s_at--694--5071Chr03:22304216..22304240 (25 bp)
GCAGCGAATGTTATGTGGCCTAGAT
LOC_Os03g40194
OsAffx.13260.1.S1_s_at--888--8451Chr03:22304201..22304225 (25 bp)
TGGCCTAGATGACAAACCCGAGCTC
LOC_Os03g40194
OsAffx.13260.1.S1_s_at--590--5911Chr03:22304182..22304206 (25 bp)
GAGCTCATCCAGGTTGGTCAATCCC
LOC_Os03g40194
OsAffx.13260.1.S1_s_at--918--7071Chr03:22304166..22304190 (25 bp)
GTCAATCCCTCGTGCAAAAGTGTCA
LOC_Os03g40194
OsAffx.13260.1.S1_s_at--1108--831Chr03:22304142..22304166 (25 bp)
ATGGAATTCCTCTAGCTGCTGTAAC
LOC_Os03g40194
OsAffx.13260.1.S1_s_at--831--10131Chr03:22304024..22304048 (25 bp)
TATGCTGACCACGACGGCAGGTGTA
LOC_Os03g40194
OsAffx.13260.1.S1_s_at--1043--9431Chr03:22303996..22304020 (25 bp)
TCGGTCGCACTTCAGATGAGCTATG
LOC_Os03g40194
OsAffx.13260.1.S1_s_at--799--1331Chr03:22303950..22303974 (25 bp)
AGAGGTGCTTTGCATTCTGTGCTTT
LOC_Os03g40194
Target Sequence 
GAGCATCAGGGAGCACGGTCATTGTGACGACCCGTGAACTTTGTGTTGCAAGAACCTTAGAAGCACCTGCATCTGGCATC
ATTGAGCTGGGACCAATGAGTGATGATGAGATATGGTCCATAATGAGGCAGCGAATGTTATGTGGCCTAGATGACAAACC
CGAGCTCATCCAGGTTGGTCAATCCCTCGTGCAAAAGTGTCATGGAATTCCTCTAGCTGCTGTAACACTCGGGGATTTGC
TGAGAAAGAAGGGAACCTCTAATGAATGGTCTAGTGTCATAGAAGCTGCCAATGAATGGTTGGCTCTTGCAGAAAGCGAT
ATGCTGACCACGACGGCAGGTGTAGCCTCGGTCGCACTTCAGATGAGCTATGAGCACTTGCAACCAGACACCAAGAGGTG
CTTTGCATTCTGTGCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13260.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis