Browse Element(s) Details


Os.30983.1.S1_at

Description gb:AK108026.1
DB_XREF= gi:32993235
TID=Os.30983.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30983 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OJ1523_A02.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-137-A02, full insert sequence.
FL= gb:AK108026.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4017011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g40150Os.33624.3.S1_x_at11/113+22264996..22268465hypothetical protein
LOC_Os03g40150OsAffx.25216.1.S1_x_at7/113+22264996..22268465hypothetical protein
LOC_Os03g40160OsAffx.25217.1.S1_x_at11/113+22269012..22276271transposon protein, putative, unclassified
LOC_Os03g40160OsAffx.25217.2.S1_x_at4/113+22269012..22276271transposon protein, putative, unclassified
LOC_Os03g40170Os.30983.1.S1_at11/113+22286936..22289703Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g40170Os.30983.2.S1_x_at11/113+22286936..22289703Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g40180Os.11582.1.S1_s_at11/113+22291275..2229292760S ribosomal protein L15, putative, expressed
LOC_Os03g40180Os.11582.2.S1_at11/113+22291275..2229292760S ribosomal protein L15, putative, expressed
LOC_Os03g40194OsAffx.13260.2.S1_at11/113+22295982..22305019DSBA-like thioredoxin domain containing protein, expressed
LOC_Os03g40194OsAffx.13260.1.S1_s_at11/113+22295982..22305019DSBA-like thioredoxin domain containing protein, expressed
LOC_Os03g40194Os.10592.1.S1_at7/113+22295982..22305019DSBA-like thioredoxin domain containing protein, expressed
LOC_Os03g40194Os.8905.1.S1_at2/113+22295982..22305019DSBA-like thioredoxin domain containing protein, expressed
LOC_Os03g40210OsAffx.25447.1.S1_at10/113+22307265..22309410hypothetical protein
LOC_Os03g40220OsAffx.10237.1.S1_at1/113+22312331..22314326transposon protein, putative, unclassified
LOC_Os03g40220OsAffx.16318.1.S1_x_at1/113+22312331..22314326transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30983.1.S1_at--782--4831Chr03:22289281..22289396 (25 bp)
GCTCAAAGGTAATGCTGTTCCATGA
LOC_Os03g40170
Os.30983.1.S1_at--520--7071Chr03:22289380..22289404 (25 bp)
GTAATGCTGTTCCATGAGGATTCAT
LOC_Os03g40170
Os.30983.1.S1_at--625--7931Chr03:22289397..22289421 (25 bp)
GGATTCATGATCATAATGCTGCAAC
LOC_Os03g40170
Os.30983.1.S1_at--879--1391Chr03:22289445..22289469 (25 bp)
AGACTCACGGGGACTGGATCACCTA
LOC_Os03g40170
Os.30983.1.S1_at--401--4931Chr03:22289484..22289508 (25 bp)
GCTTGACGAAAATCAAAGTCGCTAG
LOC_Os03g40170
Os.30983.1.S1_at--1099--2311Chr03:22289498..22289522 (25 bp)
AAAGTCGCTAGATTGTTTGCTGAAA
LOC_Os03g40170
Os.30983.1.S1_at--890--8771Chr03:22289511..22289535 (25 bp)
TGTTTGCTGAAACTTCCAGCGGCGC
LOC_Os03g40170
Os.30983.1.S1_at--67--10691Chr03:22289524..22289548 (25 bp)
TTCCAGCGGCGCAAAGATTTTTTAT
LOC_Os03g40170
Os.30983.1.S1_at--1027--4951Chr03:22289569..22289593 (25 bp)
GCATATAATTCTTTTCTCATTTTTC
LOC_Os03g40170
Os.30983.1.S1_at--12--10731Chr03:22289673..22289697 (25 bp)
TTGCTTCTGATGCTGAAATACGAAA
LOC_Os03g40170
Os.30983.1.S1_at--858--3831Chr03:22289679..22289703 (25 bp)
CTGATGCTGAAATACGAAACTTCTG
LOC_Os03g40170
Target Sequence 
GCTCAAAGGTAATGCTGTTCCATGAGGATTCATGATCATAATGCTGCAACGTNNNNGNNATGTTGGAGAGTGGAGACTCA
CGGGGACTGGATCACCTANANNNNTGTACATAGCTTGACGAAAATCAAAGTCGCTAGATTGTTTGCTGAAACTTCCAGCG
GCGCAAAGATTTTTTATTATTTTTTTGTTTCNGTAGAGCATATAATTCTTTTCTCATTTTTCAGAAAAAATNGGTANGNT
TGTGTCAATCCACATATCACATTTCGATTGGATGTTACAGATGCGCGTTTGAGTGATTGCATTTGCTTCTGATGCTGAAA
TACGAAACTTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30983.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis